Browse Element(s) Details


Os.7576.1.S1_at

Description gb:AK120583.1
DB_XREF= gi:37990206
TID=Os.7576.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136F06, full insert sequence.
FL= gb:AK120583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3298011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os04g32970OsAffx.26298.1.S1_at11/114+19745742..19750095OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein
LOC_Os04g32989NANA4+19758111..19758547NA
LOC_Os04g33000Os.11190.1.S1_s_at11/114+19775551..19776204expressed protein
LOC_Os04g33000Os.11190.1.S1_at11/114+19775551..19776204expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7576.1.S1_at--125--7691Chr04:19753250..19753274 (25 bp)
GGGTTACACGGTTCAGCTGGCAGAT
LOC_Os04g32980
Os.7576.1.S1_at--865--8851Chr04:19753089..19753113 (25 bp)
TGATGATGGCCGCTGCAACCCAAAG
LOC_Os04g32980
Os.7576.1.S1_at--640--2351Chr04:19753068..19753092 (25 bp)
AAAGCTCCACGCATGATGGTCGAAA
LOC_Os04g32980
Os.7576.1.S1_at--1136--2851Chr04:19753045..19753069 (25 bp)
AAGTGCGGCGTTTCAGAAATCTGCT
LOC_Os04g32980
Os.7576.1.S1_at--1074--1411Chr04:19753031..19753055 (25 bp)
AGAAATCTGCTTCGGCTGTGTCGGC
LOC_Os04g32980
Os.7576.1.S1_at--727--7171Chr04:19753012..19753036 (25 bp)
GTCGGCCACCATCGAAGTTATTCTG
LOC_Os04g32980
Os.7576.1.S1_at--291--7691Chr04:19752972..19752996 (25 bp)
GGGTCAAAACTCTGCTTTGCTTTGG
LOC_Os04g32980
Os.7576.1.S1_at--1038--9371Chr04:19752906..19752930 (25 bp)
TCGAGTTGTGCGAGGATCCTGTACA
LOC_Os04g32980
Os.7576.1.S1_at--477--971Chr04:19752873..19752897 (25 bp)
AGGAGATTTTTTGCGCATGGAACAT
LOC_Os04g32980
Os.7576.1.S1_at--34--6971Chr04:19752773..19752797 (25 bp)
GTAGCGATGTGTGATCCTGCGGTCC
LOC_Os04g32980
Os.7576.1.S1_at--1159--9131Chr04:19752756..19752780 (25 bp)
TGCGGTCCTTCAATCAGCAGGAATT
LOC_Os04g32980
Target Sequence 
GGGTTACACGGTTCAGCTGGCAGATTAATTATCTTCAGAGGTGTGGTGTGAACTGTGAAGTGATGGAGGTGTTGTTCTTG
AGATGAACAGAGACAACAAAGGGGGTTACAGTTACAGTTACAGTCAGACGAGATGCTATACAAATGAGAAATGACAGCAG
CTGATGATGGCCGCTGCAACCCAAAGCTCCACGCATGATGGTCGAAAGTGCGGCGTTTCAGAAATCTGCTTCGGCTGTGT
CGGCCACCATCGAAGTTATTCTGAACATAAATTGGTTTGGGTCAAAACTCTGCTTTGCTTTGGAGTGCAGAAAGGGAGTG
TAGAGGCGCACTAACGATTAGGGGTCGAGTTGTGCGAGGATCCTGTACAAGAACAGCAGGAGATTTTTTGCGCATGGAAC
ATCGAAAATGCCTTGATCAAAGGCATAATTAGAAAGATTGTCTTGTAAAATTGGTCAAAGTTTTTGTTCCAATTCATGTA
GCGATGTGTGATCCTGCGGTCCTTCAATCAGCAGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis