Browse Element(s) Details


Os.11092.1.S1_at

Description gb:CB658456
DB_XREF= gi:29662181
DB_XREF=OSJNEc14I02.r
CLONE=OSJNEc14I02
TID=Os.11092.1
CNT=74
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008D14, full insert sequence
FL= gb:AK061185.1 gb:AK069118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3295011/11Calnexin homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32920Os.11262.2.S1_x_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32920Os.11262.1.S1_a_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32930Os.54388.1.S1_at11/114+19706006..19709314DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os04g32940Os.54498.1.S1_at10/114+19712873..19716261Leucine Rich Repeat family protein, expressed
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os04g32970OsAffx.26298.1.S1_at11/114+19745742..19750095OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11092.1.S1_at--370--31Chr04:19726548..19726572 (25 bp)
ATTGGAATTCTGGTCTCCATCGTTG
LOC_Os04g32950
Os.11092.1.S1_at--817--511Chr04:19726530..19726554 (25 bp)
ATCGTTGTCGTCTTTGTGACTGTGC
LOC_Os04g32950
Os.11092.1.S1_at--749--10251Chr04:19726518..19726542 (25 bp)
TTTGTGACTGTGCTCTTCAGGATCC
LOC_Os04g32950
Os.11092.1.S1_at--736--9631Chr04:19726502..19726526 (25 bp)
TCAGGATCCTGTTCGGCGGCAAGAA
LOC_Os04g32950
Os.11092.1.S1_at--779--4251Chr04:19726377..19726401 (25 bp)
CCTGTGAAGCCCGTAGCCGAGGTCA
LOC_Os04g32950
Os.11092.1.S1_at--865--4371Chr04:19726347..19726371 (25 bp)
CCAAAGTCTACCGAGTCCGAAGCAG
LOC_Os04g32950
Os.11092.1.S1_at--483--2071Chr04:19726224..19726248 (25 bp)
ACATAAGCCTTTGATTTTGACGTCT
LOC_Os04g32950
Os.11092.1.S1_at--267--171Chr04:19726211..19726235 (25 bp)
ATTTTGACGTCTTATCGCGGCCATT
LOC_Os04g32950
Os.11092.1.S1_at--268--4651Chr04:19726183..19726207 (25 bp)
GCGGCTGCTTTTTTCCTTTTTCGAG
LOC_Os04g32950
Os.11092.1.S1_at--444--10091Chr04:19726126..19726150 (25 bp)
TAGGAGATTCATGTCGCCTATGCTC
LOC_Os04g32950
Os.11092.1.S1_at--810--6291Chr04:19726095..19726119 (25 bp)
GATGATGATTTGGTACCCCTGCTTA
LOC_Os04g32950
Target Sequence 
ATTGGAATTCTGGTCTCCATCGTTGTCGTCTTTGTGACTGTGCTCTTCAGGATCCTGTTCGGCGGCAAGAAGCCAGCGGC
TCCTGTGAAGCCCGTAGCCGAGGTCAAAAAACCAAAGTCTACCGAGTCCGAAGCAGCTGGAAGCAGCGGTGNCAAGGAGG
ACGAGAAGGAAGAGGAAGAGAAGGATGGAGCTGCTGCCCCACGCCGGAGGTCCCGAAGGGAGACATGAGACACAACATAA
GCCTTTGATTTTGACGTCTTATCGCGGCCATTTTGGCGGCTGCTTTTTTCCTTTTTCGAGAACTTGGGCTTTTATGTTTT
TTGAGTGTATAATAGGAGATTCATGTCGCCTATGCTCCCTGCAGATGATGATTTGGTACCCCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis