Browse Element(s) Details


Os.54498.1.S1_at

Description gb:AK105362.1
DB_XREF= gi:32990571
TID=Os.54498.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E06, full insert sequence.
FL= gb:AK105362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3294010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32910OsAffx.30226.2.S1_s_at7/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_x_at6/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_at5/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.30226.2.S1_x_at3/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32920Os.11262.2.S1_x_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32920Os.11262.1.S1_a_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32930Os.54388.1.S1_at11/114+19706006..19709314DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os04g32940Os.54498.1.S1_at10/114+19712873..19716261Leucine Rich Repeat family protein, expressed
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54498.1.S1_at--423--4631Chr04:19713410..19713434 (25 bp)
GCGATGATGTCAACGCCGCCATATC
LOC_Os04g32940
Os.54498.1.S1_at--1113--4371Chr04:19713319..19713343 (25 bp)
CCAAGAACATTCAAGCCAGGCGGTG
LOC_Os04g32940
Os.54498.1.S1_at--891--9971Chr04:19713162..19713186 (25 bp)
TACCTCAGGTGAATCATGGCCGAGC
LOC_Os04g32940
Os.54498.1.S1_at--908--3031Chr04:19713132..19713156 (25 bp)
AATCCATTCTCAGCTTTCCATGCAT
LOC_Os04g32940
Os.54498.1.S1_at--1084--671Chr04:19713105..19713129 (25 bp)
ATGACATGCCACGTGACTTCTCTTG
LOC_Os04g32940
Os.54498.1.S1_at--888--10231Chr04:19713076..19713100 (25 bp)
TTTGGCAATGCCCTCTGCTAGCTAG
LOC_Os04g32940
Os.54498.1.S1_at--268--10011Chr04:19713054..19713078 (25 bp)
TAGCTCATCTGCCATATATTCACCA
LOC_Os04g32940
Os.54498.1.S1_at--998--771Chr04:19713030..19713054 (25 bp)
ATGTGCTAGCTAAACACCTACCTTG
LOC_Os04g32940
Os.54498.1.S1_at--205--4331Chr04:19712922..19712946 (25 bp)
CCATTATATTATACCGCCCATCAAT
LOC_Os04g32940
Os.54498.1.S1_at--809--9871Chr04:19712894..19712918 (25 bp)
TACATATTTCACAATGCCCATCCAC
LOC_Os04g32940
Os.54498.1.S1_at--678--3331Chr04:19712872..19712896 (25 bp)
CACTGCTTCCATCCATGTATATTGA
NONE
Target Sequence 
GCGATGATGTCAACGCCGCCATATCCGCACCGGCGTGGAAGGAGCTCCATGTCCGCGGGTGCTGGAGCCTACGCCGTCTC
CCGCTCCTCCGCCAAGAACATTCAAGCCAGGCGGTGGAGGTGAGCGGGGAGAGGGCATGGTGGCGGAAGCTCATCTGGGA
CGACGACTCCACCATGCACAGCGCCAGCTATAAATCCAAGCTTCCCCTGCCGTTTGCCTCCTTCAACGAGCGCGCCACGG
TGATGAGCTACCTCAGGTGAATCATGGCCGAGCTCATCAATCCATTCTCAGCTTTCCATGCATCCATGACATGCCACGTG
ACTTCTCTTGCCATTTTGGCAATGCCCTCTGCTAGCTAGCTCATCTGCCATATATTCACCATGTGCTAGCTAAACACCTA
CCTTGATTCACTACAACAACAAAAAAAACTTACCTTACTTGACAGTATTCCACCTACACCCATTCTAGTACCATACATAT
GCCACATACCATTATATTATACCGCCCATCAATCCATACATATTTCACAATGCCCATCCACTGCTTCCATCCATGTATAT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis