Browse Element(s) Details


Os.11262.1.S1_a_at

Description gb:AY324878.1
DB_XREF= gi:34538928
TID=Os.11262.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11262 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) KUP1 mRNA, complete cds.
PROD=KUP1
FL= gb:AK119891.1 gb:AK119883.1 gb:AK101722.1 gb:AY324878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3292011/11Potassium transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32890Os.46500.1.S1_at9/114+19678051..19679973transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g32900NANA4+19687057..19687524transposon protein, putative, unclassified
LOC_Os04g32910OsAffx.30226.2.S1_s_at7/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_x_at6/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_at5/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.30226.2.S1_x_at3/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32920Os.11262.2.S1_x_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32920Os.11262.1.S1_a_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32930Os.54388.1.S1_at11/114+19706006..19709314DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os04g32940Os.54498.1.S1_at10/114+19712873..19716261Leucine Rich Repeat family protein, expressed
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11262.1.S1_a_at--885--8411Chr04:19704502..19704526 (25 bp)
GGCCGCGGCGTGGTGTACCTGATGG
LOC_Os04g32920
Os.11262.1.S1_a_at--365--791Chr04:19704523..19704547 (25 bp)
ATGGGCGAGGCCAACGTGTCGGCGG
LOC_Os04g32920
Os.11262.1.S1_a_at--218--1331Chr04:19704569..19704593 (25 bp)
AGAGGATCGCGGTGAACTACATCTA
LOC_Os04g32920
Os.11262.1.S1_a_at--13--7371Chr04:19704580..19704604 (25 bp)
GTGAACTACATCTACACCTTCCTGA
LOC_Os04g32920
Os.11262.1.S1_a_at--587--3731Chr04:19704585..19704609 (25 bp)
CTACATCTACACCTTCCTGAGGAAG
LOC_Os04g32920
Os.11262.1.S1_a_at--163--3631Chr04:19704597..19704621 (25 bp)
CTTCCTGAGGAAGAACCTGACAGAA
LOC_Os04g32920
Os.11262.1.S1_a_at--1145--931Chr04:19704604..19704628 (25 bp)
AGGAAGAACCTGACAGAAGGGCACA
LOC_Os04g32920
Os.11262.1.S1_a_at--582--5591Chr04:19704679..19704703 (25 bp)
GAAATCTAGGCATTTGATACATCTG
LOC_Os04g32920
Os.11262.1.S1_a_at--639--6471Chr04:19704694..19704718 (25 bp)
GATACATCTGATCTGATATCAAAGT
LOC_Os04g32920
Os.11262.1.S1_a_at--768--8911Chr04:19704744..19704768 (25 bp)
TGAGCCTAGTATAAACCATGGGTTT
LOC_Os04g32920
Os.11262.1.S1_a_at--237--10291Chr04:19704831..19704855 (25 bp)
TTTCAGCTGAAAGTGTTGGCAGGCA
LOC_Os04g32920
Target Sequence 
GGCCGCGGCGTGGTGTACCTGATGGGCGAGGCCAACGTGTCGGCGGGGCCCAACTCGTCCATCCTCAAGAGGATCGCGGT
GAACTACATCTACACCTTCCTGAGGAAGAACCTGACAGAAGGGCACAGGGCACTGGCGATTCCNAACGATCAGCTGCTCA
AGGTTGGGATCACGTNATGAAATCTAGGCATTTGATACATCTGATCTGATATCAAAGTATACATATATATGTGGGAAAAA
AAATGAGCCTAGTATAAACCATGGGTTTTGTTGATGATGCTGATGTTGGAAGAGAGGGCAAAGTGCNCTTTTTTTGTTTG
TTGAATAAGTAGTTTCAGCTGAAAGTGTTGGCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11262.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis