Browse Element(s) Details


Os.54388.1.S1_at

Description gb:AK103868.1
DB_XREF= gi:32989077
TID=Os.54388.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149H08, full insert sequence.
FL= gb:AK103868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3293011/11DNA repair metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32900NANA4+19687057..19687524transposon protein, putative, unclassified
LOC_Os04g32910OsAffx.30226.2.S1_s_at7/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_x_at6/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_at5/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.30226.2.S1_x_at3/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32920Os.11262.2.S1_x_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32920Os.11262.1.S1_a_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32930Os.54388.1.S1_at11/114+19706006..19709314DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os04g32940Os.54498.1.S1_at10/114+19712873..19716261Leucine Rich Repeat family protein, expressed
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54388.1.S1_at--537--2251Chr04:19706713..19707210 (25 bp)
AAATTACTATCTATGGTGTTCCTTA
LOC_Os04g32930
Os.54388.1.S1_at--1043--3111Chr04:19706574..19706680 (25 bp)
AATTTGTGATGTTTCTGAGACCCCA
LOC_Os04g32930
Os.54388.1.S1_at--195--9691Chr04:19706447..19706471 (25 bp)
TCACTTTATCCATGTCAACCTTAGC
LOC_Os04g32930
Os.54388.1.S1_at--270--7471Chr04:19706311..19706333 (23 bp)
GTGTGACACGACGATTGTGCCTCCA
LOC_Os04g32930
Os.54388.1.S1_at--54--9231Chr04:19706290..19706314 (25 bp)
TCCAGTCCCGAAGTCTGAGGAGCAG
LOC_Os04g32930
Os.54388.1.S1_at--1117--6171Chr04:19706274..19706298 (25 bp)
GAGGAGCAGCCAAGATCTTCAGTGA
LOC_Os04g32930
Os.54388.1.S1_at--1152--9431Chr04:19706240..19706264 (25 bp)
TCGGTATACTCTGTTCTGATGCTGT
LOC_Os04g32930
Os.54388.1.S1_at--620--3411Chr04:19706145..19706169 (25 bp)
CAGACTCCAGTTATTGTTCAACCAA
LOC_Os04g32930
Os.54388.1.S1_at--752--10511Chr04:19706100..19706124 (25 bp)
TTCAACAGGCGTCATTGCAAAGCAT
LOC_Os04g32930
Os.54388.1.S1_at--892--5131Chr04:19706084..19706108 (25 bp)
GCAAAGCATGTAGCCACACTGGGTA
LOC_Os04g32930
Os.54388.1.S1_at--852--3171Chr04:19706068..19706092 (25 bp)
CACTGGGTACAGCACTAAGGTTTCT
LOC_Os04g32930
Target Sequence 
AAATTACTATCTATGGTGTTCCTTATAGCGAGCACTCAAGTTTCAGTGAGCTTAGAGAATTTGTGATGTTTCTGAGACCC
CAAAAGGTAATTCCCACTGTTAATGTTGGGAACGCGGCAAGTCGAGACAATGCAAGCACATTTTCGGGAATGGCTGAAGG
GCTTGTGAGAGATGAAGCCTAATCACTTTATCCATGTCAACCTTAGCTGTTGGATATTCAGTGTGACACGACGATTGTGC
CTCCAGTCCCGAAGTCTGAGGAGCAGCCAAGATCTTCAGTGAAGGTGAAGATCGGTATACTCTGTTCTGATGCTGTAAGT
TAGGAATTTCCAAAGTTGTACTGGTTGTTAAAACTCTGTTGTATATTCAGTGAAATAGTAACATTACAGACTCCAGTTAT
TGTTCAACCAAATACATTGCTCTGATACTATTTCAACAGGCGTCATTGCAAAGCATGTAGCCACACTGGGTACAGCACTA
AGGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis