Browse Element(s) Details


OsAffx.26297.1.S1_at

Description tigr:9632.m03151
TID=OsAffx.26297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tudor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3296011/11110 kDa 4SNc-Tudor domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32930Os.54388.1.S1_at11/114+19706006..19709314DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os04g32940Os.54498.1.S1_at10/114+19712873..19716261Leucine Rich Repeat family protein, expressed
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os04g32970OsAffx.26298.1.S1_at11/114+19745742..19750095OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein
LOC_Os04g32989NANA4+19758111..19758547NA

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26297.1.S1_at--595--2751Chr04:19734536..19734560 (25 bp)
AAGAACTTGTTCCTCACAGTTGCCT
LOC_Os04g32960
OsAffx.26297.1.S1_at--912--2131Chr04:19734521..19734545 (25 bp)
ACAGTTGCCTGAGACCTATCAATCT
LOC_Os04g32960
OsAffx.26297.1.S1_at--742--3691Chr04:19734506..19734530 (25 bp)
CTATCAATCTATCCATTTCCTCTAT
LOC_Os04g32960
OsAffx.26297.1.S1_at--125--4311Chr04:19734452..19734476 (25 bp)
CCTTTGTGAAGGTGCCCAGTCTAAA
LOC_Os04g32960
OsAffx.26297.1.S1_at--820--411Chr04:19734422..19734446 (25 bp)
ATCTTGGGCAAGAGGCAGCTATGTA
LOC_Os04g32960
OsAffx.26297.1.S1_at--985--6891Chr04:19734400..19734424 (25 bp)
GTATCTGAACAGTATCTTGCTTGAC
LOC_Os04g32960
OsAffx.26297.1.S1_at--885--3951Chr04:19734301..19734325 (25 bp)
CGGAGAAATCCTCGGCGTGACTCTA
LOC_Os04g32960
OsAffx.26297.1.S1_at--366--9451Chr04:19734290..19734314 (25 bp)
TCGGCGTGACTCTACTCGATAGTGA
LOC_Os04g32960
OsAffx.26297.1.S1_at--106--8031Chr04:19733775..19733799 (25 bp)
GGAGGGCAGCCATCAAGAAGCTTGA
LOC_Os04g32960
OsAffx.26297.1.S1_at--362--1571Chr04:19733721..19733745 (25 bp)
AGCTAGGCGTCTGGTGCCCAAAGAA
LOC_Os04g32960
OsAffx.26297.1.S1_at--450--671Chr04:19733676..19733700 (25 bp)
ATGAAAACGAGTACCCTGTCCTGGC
LOC_Os04g32960
Target Sequence 
AAGAACTTGTTCCTCACAGTTGCCTGAGACCTATCAATCTATCCATTTCCTCTATTCCTCCCCTTGCAAAGCTGTGCAGC
CTTGCCTTTGTGAAGGTGCCCAGTCTAAATGACTATCTTGGGCAAGAGGCAGCTATGTATCTGAACAGTATCTTGCTTGA
CAATGGGAGAGAATTTGAGGCTATTGTCGAAGAGCGAGATGCTGCTTCGGGAGGGAAATTGCAGGGTCAGGGAACCGGAG
AAATCCTCGGCGTGACTCTACTCGATAGTGAGACCGACAATAGCATCAATGCTGAGATGCTAGAGAGAGGGTATGGTCAA
CTTGAGAGGAGGAGATGGGACTCGAGGGAGAGGAGGGCAGCCATCAAGAAGCTTGAGGAATTCCAGGAGGTAGCAAGGAA
GGAGCAGCTAGGCGTCTGGTGCCCAAAGAATGCAAGGAAGCAGGGCATGGATGAAAACGAGTACCCTGTCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis