Browse Element(s) Details


Os.7614.1.S1_at

Description gb:CA761236
DB_XREF= gi:25805275
DB_XREF=BR060003B20D08.ab1
CLONE=BR060003B20D08.ab1
TID=Os.7614.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7614 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201064.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1360011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13590OsAffx.27616.1.S1_at11/116+7518620..7519481hypothetical protein
LOC_Os06g13600Os.7614.1.S1_at11/116+7529846..7533850HEAT repeat family protein, expressed
LOC_Os06g13610OsAffx.30187.1.S1_at11/116+7539775..7540865hypothetical protein
LOC_Os06g13620OsAffx.15410.1.S1_at11/116+7543707..7544168hypothetical protein
LOC_Os06g13630OsAffx.16522.1.S1_at1/116+7544994..7548258transposon protein, putative, Mutator sub-class
LOC_Os06g13640Os.27936.1.A1_at1/116+7554464..7557366expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0010031biological_processcircumnutation
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7614.1.S1_at--777--8811Chr06:7532947..7532971 (25 bp)
TGTTGTCACCAACCCATTAGCAGAG
LOC_Os06g13600
Os.7614.1.S1_at--950--5851Chr06:7532969..7532993 (25 bp)
GAGCCAAACGCTTCATTCGCAGGAA
LOC_Os06g13600
Os.7614.1.S1_at--268--571Chr06:7533475..7533499 (25 bp)
ATCCTACCTTTGCTGCATTTTCAAG
LOC_Os06g13600
Os.7614.1.S1_at--472--6751Chr06:7533567..7533591 (25 bp)
GTTCAGACTCGTGAGAAACAGCCTA
LOC_Os06g13600
Os.7614.1.S1_at--449--5531Chr06:7533581..7533605 (25 bp)
GAAACAGCCTAAAGCCCTAGACTCT
LOC_Os06g13600
Os.7614.1.S1_at--266--1411Chr06:7533599..7533623 (25 bp)
AGACTCTAAAGCAAGACCCTCTCTG
LOC_Os06g13600
Os.7614.1.S1_at--370--5931Chr06:7533625..7533649 (25 bp)
GAGCTTGGCATTCCATTTGTGTTAT
LOC_Os06g13600
Os.7614.1.S1_at--546--7411Chr06:7533643..7533667 (25 bp)
GTGTTATACACCAGGCCTTGAGATT
LOC_Os06g13600
Os.7614.1.S1_at--910--1411Chr06:7533669..7533693 (25 bp)
AGACAACCAGTTAGCTAATGCAGGC
LOC_Os06g13600
Os.7614.1.S1_at--631--4831Chr06:7533682..7533706 (25 bp)
GCTAATGCAGGCTTGCTGAGGGCAA
LOC_Os06g13600
Os.7614.1.S1_at--652--6891Chr06:7533788..7533812 (25 bp)
GTATCTTGTTACTGCTTGTACATAA
LOC_Os06g13600
Target Sequence 
TGTTGTCACCAACCCATTAGCAGAGCCAAACGCTTCATTCGCAGGAAACACNGTTGTTGCTCAGGAAGCCAGGAGACAGA
ATTCAGCTCAATATAAGTCAAGGATGGGTTAGAGTTGACAAAGGCTNCTGCGTGAAGTTTTCGACGATATGAACAAAGCA
TGGTGCAGCTNCAAGATCCTACCTTTGCTGCATTTTCAAGCTCTTTTCTTCTTTTCTCCAAGTTGAAAAAAAACAGAGAT
GTACATGAGATATGAAGTTCTGTTTGAGTTCAGACTCGTGAGAAACAGCCTAAAGCCCTAGACTCTAAAGCAAGACCCTC
TCTGNGAGCTTGGCATTCCATTTGTGTTATACACCAGGCCTTGAGATTGAGACAACCAGTTAGCTAATGCAGGCTTGCTG
AGGGCAAAGCATATGTAGAGTTTANAATGAGAAATCGAGTTCANAGCAACTATCCTTGCANGGATATTCANCNATGGTTC
CCATGAANGTATCTTGTTACTGCTTGTACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis