Browse Element(s) Details


Os.7615.1.S1_at

Description gb:AK101807.1
DB_XREF= gi:32987016
TID=Os.7615.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066K16, full insert sequence.
FL= gb:AK101807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4357610/11Lipoic acid synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009105biological_processlipoic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0017140molecular_functionlipoic acid synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7615.1.S1_at--797--10211Chr05:25262768..25262792 (25 bp)
TATTACTACTATACATCTGATGGCC
LOC_Os05g43576
Os.7615.1.S1_at--1090--10171Chr05:25262777..25262801 (25 bp)
TATACATCTGATGGCCTGGTGCAGT
LOC_Os05g43576
Os.7615.1.S1_at--70--8891Chr05:25262785..25262809 (25 bp)
TGATGGCCTGGTGCAGTTCTTTGAT
LOC_Os05g43576
Os.7615.1.S1_at--890--8091Chr05:25262867..25262891 (25 bp)
GGACCAAAGGCCTAGAGTGACATGC
LOC_Os05g43576
Os.7615.1.S1_at--1013--1111Chr05:25262882..25262906 (25 bp)
AGTGACATGCCTATAGGCGCTCGTT
LOC_Os05g43576
Os.7615.1.S1_at--979--271Chr05:25262894..25262918 (25 bp)
ATAGGCGCTCGTTGTTCTAGCCATG
LOC_Os05g43576
Os.7615.1.S1_at--252--6651Chr05:25262904..25262928 (25 bp)
GTTGTTCTAGCCATGCTGTGATATC
LOC_Os05g43576
Os.7615.1.S1_at--621--4731Chr05:25262918..25262942 (25 bp)
GCTGTGATATCTGCTGTAGCCTGTA
LOC_Os05g43576
Os.7615.1.S1_at--40--8771Chr05:25262951..25262975 (25 bp)
TGTTTTTCACTTTCTTACTCGGGCT
LOC_Os05g43576
Os.7615.1.S1_at--526--11Chr05:25262964..25262988 (25 bp)
CTTACTCGGGCTGTCAAAAAAGTGT
LOC_Os05g43576
Os.7615.1.S1_at--504--9911Chr05:25263031..25263055 (25 bp)
TACTGCCCATGACGCTTCGTTATAA
NONE
Target Sequence 
TATTACTACTATACATCTGATGGCCTGGTGCAGTTCTTTGATGAAAGTTTTGCATTGAAGTTGTGTGCTGATGACAGGAG
TAAGGNGGTGGCACAATCGGGACCAAAGGCCTAGAGTGACATGCCTATAGGCGCTCGTTGTTCTAGCCATGCTGTGATAT
CTGCTGTAGCCTGTAAAAAAAATTGTTTTTCACTTTCTTACTCGGGCTGTCAAAAAAGTGTATGGAAACCAGATAAAATA
ATACCGAATGCTAAAATTCATGTTACTGCCCATGACGCTTCGTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis