Browse Element(s) Details


Os.7657.1.S1_at

Description gb:AK099527.1
DB_XREF= gi:32984736
TID=Os.7657.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.7657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031C07, full insert sequence.
FL= gb:AK099527.1 gb:AK062082.1 gb:AK058876.1 gb:AK121351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6009011/11Methylenetetrahydrofolate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60030NANA3+34081784..34084205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g60050NANA3+34090307..34096975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g60060NANA3+34099228..34100983transposon protein, putative, unclassified
LOC_Os03g60080Os.26695.1.S1_at11/113+34105034..34106478NAC-domain containing protein 19, putative, expressed
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006555biological_processmethionine metabolism
GO:0004489molecular_functionmethylenetetrahydrofolate reductase (NADPH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7657.1.S1_at--1075--2771Chr03:34107713..34107737 (25 bp)
AAGAGCAAGGCATTCCCTTCTCTTA
LOC_Os03g60090
Os.7657.1.S1_at--304--4311Chr03:34107698..34107722 (25 bp)
CCTTCTCTTACATACATTGCCGTGA
LOC_Os03g60090
Os.7657.1.S1_at--810--2251Chr03:34107595..34107619 (25 bp)
AAATAGTCCAGCCAACTGTCGTTGA
LOC_Os03g60090
Os.7657.1.S1_at--886--6651Chr03:34107575..34107599 (25 bp)
GTTGACTCAGCCAGCTTTATGGTTT
LOC_Os03g60090
Os.7657.1.S1_at--529--5911Chr03:34107125..34107149 (25 bp)
GAGCTACTTCTTGGTTAGTCTTGTG
LOC_Os03g60090
Os.7657.1.S1_at--1132--7131Chr03:34107108..34107132 (25 bp)
GTCTTGTGGACAACGACTACATCAA
LOC_Os03g60090
Os.7657.1.S1_at--902--371Chr03:34107088..34107112 (25 bp)
ATCAACGGTGATCTCTTCGCGGCGT
LOC_Os03g60090
Os.7657.1.S1_at--152--431Chr03:34107045..34107069 (25 bp)
ATCTTATAGTCTGCAACCTCTCGTG
LOC_Os03g60090
Os.7657.1.S1_at--205--9511Chr03:34107027..34107051 (25 bp)
TCTCGTGTCTGAATTCCTATCTTTA
LOC_Os03g60090
Os.7657.1.S1_at--138--2871Chr03:34107000..34107024 (25 bp)
AAGTGTTATTGCTTCCACGACTATA
LOC_Os03g60090
Os.7657.1.S1_at--22--5571Chr03:34106961..34106985 (25 bp)
GAAAGCTTTTGCTCATGTGATCTCG
LOC_Os03g60090
Target Sequence 
AAGAGCAAGGCATTCCCTTCTCTTACATACATTGCCGTGAACAAGGACGGAGAGTCATTCTCAAACATTCCCACAAACGC
TGTGAATGCGGTCACATGGGGTGTTTTCCCTGGCAAGGAAATAGTCCAGCCAACTGTCGTTGACTCAGCCAGCTTTATGG
TTTGGAAAGACGAAGCTTTCGAAATTTGGTCAAAGGGTTGGGCTTGCCTGTTCCCTGAGGGCGACTCATCTAGGGAGATA
CTAGACAAGGTCCAGAAGAGCTACTTCTTGGTTAGTCTTGTGGACAACGACTACATCAACGGTGATCTCTTCGCGGCGTT
CAAGGAGATTTGATGACATCTTATAGTCTGCAACCTCTCGTGTCTGAATTCCTATCTTTATCAAGTGTTATTGCTTCCAC
GACTATAGGACAGCTTTCGTCGAAAGCTTTTGCTCATGTGATCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis