Browse Element(s) Details


Os.7674.1.S1_at

Description gb:AK059089.1
DB_XREF= gi:32969107
TID=Os.7674.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B08, full insert sequence.
FL= gb:AK059089.1 gb:AK058424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1907011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19020OsAffx.27702.1.S1_at10/116+10817801..10818535hypothetical protein
LOC_Os06g19030NANA6+10820537..10821565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19040NANA6+10825032..10829372retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19050OsAffx.15487.1.S1_at11/116+10830872..10833566embryogenesis transmembrane protein, putative
LOC_Os06g19060OsAffx.27703.1.S1_at9/116+10837974..10839575hypothetical protein
LOC_Os06g19070Os.7674.1.S1_at11/116+10842947..10844982Cytochrome P450 family protein, expressed
LOC_Os06g19080OsAffx.8371.1.S1_at2/116+10848824..10851865transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19090OsAffx.27704.1.S1_at11/116+10858284..10861584hypothetical protein
LOC_Os06g19100OsAffx.27705.1.S1_at11/116+10867974..10868807hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7674.1.S1_at--463--8591Chr06:10843512..10843536 (25 bp)
TGGTACCCCGCAAGGCTGAGGTCGA
LOC_Os06g19070
Os.7674.1.S1_at--1021--7791Chr06:10843493..10843517 (25 bp)
GGTCGACATCGAGGTGAACGGCTAT
LOC_Os06g19070
Os.7674.1.S1_at--429--8971Chr06:10843479..10843503 (25 bp)
TGAACGGCTATAGGATCCCCAAGGG
LOC_Os06g19070
Os.7674.1.S1_at--113--9991Chr06:10843383..10843407 (25 bp)
TACCAGAGAGGTTCCTCGGTGGCGA
LOC_Os06g19070
Os.7674.1.S1_at--1022--8431Chr06:10843342..10843366 (25 bp)
GGCCAAGACTTCGAAATGATCCCCT
LOC_Os06g19070
Os.7674.1.S1_at--70--1851Chr06:10843249..10843273 (25 bp)
ACGCTACTCCATCGGTTCGAGTGGG
LOC_Os06g19070
Os.7674.1.S1_at--934--6791Chr06:10843120..10843144 (25 bp)
GTTATATTCGGTTAATTTCATCCAG
LOC_Os06g19070
Os.7674.1.S1_at--174--10331Chr06:10843105..10843129 (25 bp)
TTTCATCCAGTAATCCATTGTTTGT
LOC_Os06g19070
Os.7674.1.S1_at--1075--7611Chr06:10843054..10843078 (25 bp)
GGGACTAGGGAACCTATCATACTGA
LOC_Os06g19070
Os.7674.1.S1_at--784--4471Chr06:10843014..10843038 (25 bp)
GCCTGATAACTCTTTGTATCCCATT
LOC_Os06g19070
Os.7674.1.S1_at--146--6891Chr06:10842999..10843023 (25 bp)
GTATCCCATTCTACTACGAGTGATG
LOC_Os06g19070
Target Sequence 
TGGTACCCCGCAAGGCTGAGGTCGACATCGAGGTGAACGGCTATAGGATCCCCAAGGGGACCAACGTGATCCTCAACGCG
TGGGCGATCAACCGGAGTGCCGACGCGTGGTCNGAGCCGGACAAGTTCATACCAGAGAGGTTCCTCGGTGGCGAGACTAG
GGGATATCTGGGCCAAGACTTCGAAATGATCCCCTTCGGCCTCGGCCGGCGCATCTGCCCCGGGATGCCGCTTGCNCAGA
AGCTCATACCCCTCATCATCGGCACGCTACTCCATCGGTTCGAGTGGGAGCTTCCGGCGGATGCAAAGGAGGGTGGGATA
GACATGACGGAGAAGTGTGGGGTGGTGTTATCTCTAGTNAACCCCCTCAAAGCCATACCCAAGGAAATATGAGTTATATT
CGGTTAATTTCATCCAGTAATCCATTGTTTGTAAGTGTCATAGTACATGAGATCTTTAGGGACTAGGGAACCTATCATAC
TGAAATAAATTTAAATAAGCCTGATAACTCTTTGTATCCCATTCTACTACGAGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis