Browse Element(s) Details


Os.7743.2.S1_x_at

Description gb:AK100667.1
DB_XREF= gi:32985876
TID=Os.7743.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112H01, full insert sequence.
FL= gb:AK100667.1 gb:AK106768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1150011/11MCM2/3/5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g11530NANA6+6113818..6114646retrotransposon protein, putative, unclassified
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7743.2.S1_x_at--43--5551Chr06:6088377..6088401 (25 bp)
GAAACTTGATGCTATCGCTGCCATA
LOC_Os06g11500
Os.7743.2.S1_x_at--1112--5251Chr06:6088343..6088367 (25 bp)
GAATCCTCCATGACAACATCTGCAA
LOC_Os06g11500
Os.7743.2.S1_x_at--833--6471Chr06:6088313..6088337 (25 bp)
GATACTGCTGGGAATGCTCTGCACT
LOC_Os06g11500
Os.7743.2.S1_x_at--826--271Chr06:6088161..6088185 (25 bp)
ATATGGATGTTCTTGCCTATGTCTC
LOC_Os06g11500
Os.7743.2.S1_x_at--1000--3691Chr06:6088145..6088169 (25 bp)
CTATGTCTCTGGTATGGCCTTTTGA
LOC_Os06g11500
Os.7743.2.S1_x_at--839--871Chr06:6088132..6088156 (25 bp)
ATGGCCTTTTGATTCGGGCAAGCAA
LOC_Os06g11500
Os.7743.2.S1_x_at--604--10451Chr06:6087894..6087918 (25 bp)
TTAGCGAAGACTCCCCATTGTTATA
LOC_Os06g11500
Os.7743.2.S1_x_at--947--8291Chr06:6087831..6087855 (25 bp)
GGCTTATATACCATGCTGCACAATG
LOC_Os06g11500
Os.7743.2.S1_x_at--848--131Chr06:6087667..6087691 (25 bp)
ATTACTACGGTCAGTTTGGCTCTAC
LOC_Os06g11500
Os.7743.2.S1_x_at--228--10751Chr06:6087652..6087676 (25 bp)
TTGGCTCTACCAGGTAACGGTATTG
LOC_Os06g11500
Os.7743.2.S1_x_at--1025--7791Chr06:6087583..6087607 (25 bp)
GGTCTGAAATAGCAACTACTCCCTC
LOC_Os06g11500
Target Sequence 
GAAACTTGATGCTATCGCTGCCATATTATGCATTGAATCCTCCATGACAACATCTGCAATAGTAGATACTGCTGGGAATG
CTCTGCACTCAAATTTTACAGAGAACCCTGACCAGGAATGTATCCTGAAATGTGATTCCATAGCTTACTTATCCAAGAAT
ATCAAATATTTAACTGATGAAATCTCGAACTGATAATTTTTACTGTAGTGCCACGTATATGGATGTTCTTGCCTATGTCT
CTGGTATGGCCTTTTGATTCGGGCAAGCAAAGGAGAAGAAAATCCTTACGCAATTGGGAGTTAGCGAAGACTCCCCATTG
TTATAAAATATCATTACCAATATGAAGATTTACAAGCAAACGTGGCTTATATACCATGCTGCACAATGAATCAAGTGATA
TGCCAAGGGAATATGTGATTTGCACTAGATTACTACGGTCAGTTTGGCTCTACCAGGTAACGGTATTGGAAATTGTAACT
TGTTGTTTTAGATCAATGTACTGGAACTTGAAGGTCTGAAATAGCAACTACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7743.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis