Browse Element(s) Details


Os.7743.2.S2_at

Description gb:AK106768.1
DB_XREF= gi:32991977
TID=Os.7743.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence.
FL= gb:AK100667.1 gb:AK106768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1150010/11MCM2/3/5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g11530NANA6+6113818..6114646retrotransposon protein, putative, unclassified
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7743.2.S2_at--1149--5911Chr06:6086642..6086666 (25 bp)
GAGCTTCATGCCGTTGCTGCAGTGG
LOC_Os06g11500
Os.7743.2.S2_at--562--651Chr06:6086602..6086626 (25 bp)
ATGAAGTAGTGCTTGCCGGCGGTCT
LOC_Os06g11500
Os.7743.2.S2_at--961--4031Chr06:6086535..6086559 (25 bp)
CGTTGCTAGCGGTGCACGCAGCGTA
LOC_Os06g11500
Os.7743.2.S2_at--828--3351Chr06:6086475..6086499 (25 bp)
CACCGGCGTAGTTGAACACTGGAGA
LOC_Os06g11500
Os.7743.2.S2_at--1135--2891Chr06:6086420..6086444 (25 bp)
AAGGCAGCATATATAGCAGGTGAAC
LOC_Os06g11500
Os.7743.2.S2_at--76--6511Chr06:6086374..6086398 (25 bp)
GATATGCATTTTGGTACTAGGAAGC
LOC_Os06g11500
Os.7743.2.S2_at--522--231Chr06:6086338..6086362 (25 bp)
ATATCAATGCACATGTTTTACTTCT
LOC_Os06g11500
Os.7743.2.S2_at--279--3451Chr06:6086305..6086329 (25 bp)
CAGTTTCTGATGCAAGTCATGTTTA
LOC_Os06g11500
Os.7743.2.S2_at--1089--5171Chr06:6086294..6086318 (25 bp)
GCAAGTCATGTTTACTAGTTCTTTT
LOC_Os06g11500
Os.7743.2.S2_at--226--10371Chr06:6086270..6086294 (25 bp)
TTTTTCTCTAGTATGATGCCGATGC
LOC_Os06g11500
Os.7743.2.S2_at--49--10131Chr06:6086259..6086283 (25 bp)
TATGATGCCGATGCACATTTTAGTT
NONE
Target Sequence 
GAGCTTCATGCCGTTGCTGCAGTGGCCGGCGATGCCGCAGATGAAGTAGTGCTTGCCGGCGGTCTTGAGGGTGACGGTGG
TCGTGCCGCTGCTGTCGCTCTGGAGCGCGTTGCTAGCGGTGCACGCAGCGTAGTCCGCTGCGCTCACCTCATCCACCGAG
TGCGCCCCACCGGCGTAGTTGAACACTGGAGAAAAGTAAAAGTTGCTTAGAAATGCATTTGCAAGGCAGCATATATAGCA
GGTGAACTGGTGAAGTGCAGCAAGTTTTGATATGCATTTTGGTACTAGGAAGCATCAATATTCAATATCAATGCACATGT
TTTACTTCTTTTTTTTTTTCAGTTTCTGATGCAAGTCATGTTTACTAGTTCTTTTTTTCTCTAGTATGATGCCGATGCAC
ATTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7743.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis