Browse Element(s) Details


Os.7775.1.S1_at

Description gb:AK063411.1
DB_XREF= gi:32973429
TID=Os.7775.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B03, full insert sequence.
FL= gb:AK063411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1793011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17900OsAffx.17765.1.S1_at11/119+10949430..10951681hypothetical protein
LOC_Os09g17910OsAffx.29903.1.S1_at11/119+10955082..10964500Protein kinase domain containing protein
LOC_Os09g17920OsAffx.92.1.S1_at2/119+10969671..10973912transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17930Os.7775.1.S1_at11/119+10976574..10980275transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17940OsAffx.6318.1.S1_at11/119+10982365..10982730hypothetical protein
LOC_Os09g17950NANA9+10985206..10985586retrotransposon protein, putative, unclassified
LOC_Os09g17960NANA9+10986601..10988460retrotransposon protein, putative, unclassified
LOC_Os09g17970OsAffx.6319.1.S1_at11/119+10991178..10997260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17980OsAffx.29904.1.S1_at11/119+10999929..11000465hypothetical protein
LOC_Os09g17990OsAffx.29905.1.S1_at11/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17990Os.51943.1.S1_at1/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7775.1.S1_at--87--8731Chr09:10976972..10977124 (25 bp)
TGTCATGTTGACTCACCTAGCTTCG
LOC_Os09g17930
Os.7775.1.S1_at--309--7191Chr09:10976966..10976990 (25 bp)
GTCTGGACCTGTGGCTTCGAATGGA
LOC_Os09g17930
Os.7775.1.S1_at--643--7311Chr09:10976913..10976937 (25 bp)
GTGCTGCATCTGGTGCAATTGTCAA
LOC_Os09g17930
Os.7775.1.S1_at--178--5651Chr09:10976878..10976902 (25 bp)
GACAGCGGACTAGTTGTACATTCCT
LOC_Os09g17930
Os.7775.1.S1_at--674--1611Chr09:10976792..10976816 (25 bp)
AGCTGTTGGTTGTGGTTGTCTCACT
LOC_Os09g17930
Os.7775.1.S1_at--707--6811Chr09:10976742..10976766 (25 bp)
GTTTACCTGAACTTTAGGCCACATG
LOC_Os09g17930
Os.7775.1.S1_at--552--2011Chr09:10976715..10976739 (25 bp)
ACTCTAGTAGATGTTCGCTGTGTCT
LOC_Os09g17930
Os.7775.1.S1_at--474--4131Chr09:10976700..10976724 (25 bp)
CGCTGTGTCTGTTGCCTTAGGTTGG
LOC_Os09g17930
Os.7775.1.S1_at--619--8271Chr09:10976638..10976662 (25 bp)
GGCATGCGCTGGAACTTGTGAACTG
LOC_Os09g17930
Os.7775.1.S1_at--683--7891Chr09:10976614..10976638 (25 bp)
GGAAGTTCGGTTCTTTTGGTCATAT
LOC_Os09g17930
Os.7775.1.S1_at--45--271Chr09:10976591..10976615 (25 bp)
ATATGTTGGCATGCACTGGAACTTG
LOC_Os09g17930
Target Sequence 
TGTCATGTTGACTCACCTAGCTTCGTCTGGACCTGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGTTGGTG
CTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTCCTAAAACTATGGATATATTTTGTAA
CTAAACTGACCTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAA
TTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCC
TGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAACTGGAAGTTCGGTTCTTTTGGTCATA
TATGTTGGCATGCACTGGAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis