Browse Element(s) Details


OsAffx.29904.1.S1_at

Description tigr:9637.m01541
TID=OsAffx.29904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1798011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17930Os.7775.1.S1_at11/119+10976574..10980275transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17940OsAffx.6318.1.S1_at11/119+10982365..10982730hypothetical protein
LOC_Os09g17950NANA9+10985206..10985586retrotransposon protein, putative, unclassified
LOC_Os09g17960NANA9+10986601..10988460retrotransposon protein, putative, unclassified
LOC_Os09g17970OsAffx.6319.1.S1_at11/119+10991178..10997260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17980OsAffx.29904.1.S1_at11/119+10999929..11000465hypothetical protein
LOC_Os09g17990OsAffx.29905.1.S1_at11/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17990Os.51943.1.S1_at1/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18000OsAffx.6320.1.S1_at11/119+11019019..11020337Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29904.1.S1_at--123--9611Chr09:11000014..11000038 (25 bp)
TCATCGATCAGCTACTGCCAAGGCA
LOC_Os09g17980
OsAffx.29904.1.S1_at--65--1571Chr09:11000023..11000047 (25 bp)
AGCTACTGCCAAGGCAAGCCAAAGG
LOC_Os09g17980
OsAffx.29904.1.S1_at--329--8971Chr09:11000074..11000098 (25 bp)
TGAAAGATGATTCCACCGCGTGTCG
LOC_Os09g17980
OsAffx.29904.1.S1_at--864--3991Chr09:11000092..11000116 (25 bp)
CGTGTCGTGTGGATGTGGTCCCTTA
LOC_Os09g17980
OsAffx.29904.1.S1_at--880--7991Chr09:11000102..11000126 (25 bp)
GGATGTGGTCCCTTATCCAGGTCAC
LOC_Os09g17980
OsAffx.29904.1.S1_at--109--10431Chr09:11000114..11000134 (21 bp)
TTATCCAGGTCACCAGCAAGGGCTG
LOC_Os09g17980
OsAffx.29904.1.S1_at--88--7831Chr09:11000121..11000367 (25 bp)
GGTCACCAGCAAGGGCTGGCCCTAA
LOC_Os09g17980
OsAffx.29904.1.S1_at--750--4171Chr09:11000362..11000386 (25 bp)
CCCTAAGACAGTGCGGGCAGTGCGA
LOC_Os09g17980
OsAffx.29904.1.S1_at--438--1797Chr12:16192068..16192092 (25 bp)
ACCGCACTGGGCCTCCAAAATATGT
NONE
OsAffx.29904.1.S1_at--509--75514Chr12:16192076..16192100 (25 bp)
GGGCCTCCAAAATATGTATACTATG
NONE
OsAffx.29904.1.S1_at--691--6891Chr09:11000409..11000433 (25 bp)
GTATACTATGTTACCAAACCTGATA
LOC_Os09g17980
Target Sequence 
TCATCGATCAGCTACTGCCAAGGCAAGCCAAAGGAGGAGGACACGATTGGCCGCCGCCGGTGAAAGATGATTCCACCGCG
TGTCGTGTGGATGTGGTCCCTTATCCAGGTCACCAGCAAGGGCTGGCCCTAAGACAGTGCGGGCAGTGCGACCGCACTGG
GCCTCCAAAATATGTATACTATGTTACCAAACCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis