Browse Element(s) Details


OsAffx.29906.1.S1_at

Description tigr:9637.m01544
TID=OsAffx.29906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1801011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17970OsAffx.6319.1.S1_at11/119+10991178..10997260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17980OsAffx.29904.1.S1_at11/119+10999929..11000465hypothetical protein
LOC_Os09g17990OsAffx.29905.1.S1_at11/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17990Os.51943.1.S1_at1/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18000OsAffx.6320.1.S1_at11/119+11019019..11020337Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18020OsAffx.29907.1.S1_at11/119+11029070..11038913Protein kinase domain containing protein, expressed
LOC_Os09g18030OsAffx.29907.2.S1_at11/119+11048168..11055785Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29906.1.S1_at--427--5691Chr09:11027042..11027066 (25 bp)
GACTTTCCAAGACTTATCTCGGCGA
LOC_Os09g18010
OsAffx.29906.1.S1_at--1138--451Chr09:11027057..11027081 (25 bp)
ATCTCGGCGAGACGCAGACTCACAT
LOC_Os09g18010
OsAffx.29906.1.S1_at--613--4491Chr09:11027095..11027119 (25 bp)
GCCGGGACAGCTGGTTACATTGATC
LOC_Os09g18010
OsAffx.29906.1.S1_at--939--51Chr09:11027113..11027343 (25 bp)
ATTGATCCCGAGTACTACCAAACCG
LOC_Os09g18010
OsAffx.29906.1.S1_at--615--10031Chr09:11027392..11027416 (25 bp)
TAGAGATAGCCACCGGTGAGCCACC
LOC_Os09g18010
OsAffx.29906.1.S1_at--732--7371Chr09:11027407..11027431 (25 bp)
GTGAGCCACCCATAATATCGGGTCA
LOC_Os09g18010
OsAffx.29906.1.S1_at--1001--391Chr09:11027478..11027502 (25 bp)
ATCAGTTTGATTGCCGATGCACGGC
LOC_Os09g18010
OsAffx.29906.1.S1_at--510--8611Chr09:11027507..11027531 (25 bp)
TGGTGCATATGACATCAGCTCCATG
LOC_Os09g18010
OsAffx.29906.1.S1_at--563--1971Chr09:11027547..11027571 (25 bp)
ACTGCATTGCAGTGCACTGTTGATG
LOC_Os09g18010
OsAffx.29906.1.S1_at--43--6651Chr09:11027565..11027589 (25 bp)
GTTGATGTTGTTGCTCAAAGGCCAA
LOC_Os09g18010
OsAffx.29906.1.S1_at--529--7891Chr09:11027603..11027627 (25 bp)
GGTTGCCCAACTAAAGGAGAGCCTG
LOC_Os09g18010
Target Sequence 
GACTTTCCAAGACTTATCTCGGCGAGACGCAGACTCACATATCAGTCACTCCAGCCGGGACAGCTGGTTACATTGATCCC
GAGTACTACCAAACCGGCAGGTTCACGGAGAGTAGTGATGTGTATAGCTTTGGCATTGTTTTACTAGAGATAGCCACCGG
TGAGCCACCCATAATATCGGGTCAAGGCCACATCGTCCAGCGTGTGAAAAATAAGATTGTTGCTGGTGACATCAGTTTGA
TTGCCGATGCACGGCTCGATGGTGCATATGACATCAGCTCCATGTGGAAGGTGGTGGACACTGCATTGCAGTGCACTGTT
GATGTTGTTGCTCAAAGGCCAACAATGGCCACTGTGGTTGCCCAACTAAAGGAGAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis