Browse Element(s) Details


OsAffx.29907.1.S1_at

Description tigr:9637.m01545
TID=OsAffx.29907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1802011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18000OsAffx.6320.1.S1_at11/119+11019019..11020337Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18020OsAffx.29907.1.S1_at11/119+11029070..11038913Protein kinase domain containing protein, expressed
LOC_Os09g18030OsAffx.29907.2.S1_at11/119+11048168..11055785Protein kinase domain containing protein
LOC_Os09g18040OsAffx.29907.3.S1_at11/119+11058196..11059806Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29907.1.S1_at--838--7991Chr09:11029493..11029517 (25 bp)
GGATGTTCCTATATTGTCAACTCCT
LOC_Os09g18020
OsAffx.29907.1.S1_at--236--6511Chr09:11029443..11029467 (25 bp)
GATATTTCTTCCCAAAGGCCAACAA
LOC_Os09g18020
OsAffx.29907.1.S1_at--836--2891Chr09:11029429..11029453 (25 bp)
AAGGCCAACAATGTCCGGTAGTCAT
LOC_Os09g18020
OsAffx.29907.1.S1_at--819--6191Chr09:11029379..11029403 (25 bp)
GAGGAAGCTCATTGGGACACGTCTT
LOC_Os09g18020
OsAffx.29907.1.S1_at--60--3671Chr09:11029357..11029381 (25 bp)
CTTCAATGTCCATGTTTGGTCCATC
LOC_Os09g18020
OsAffx.29907.1.S1_at--645--8831Chr09:11029313..11029337 (25 bp)
TGATACCTGGCTTCGGGACATAATG
LOC_Os09g18020
OsAffx.29907.1.S1_at--232--711Chr09:11029291..11029315 (25 bp)
ATGATGGTTCTCTGCTTTAAGTCTA
LOC_Os09g18020
OsAffx.29907.1.S1_at--991--2331Chr09:11029193..11029217 (25 bp)
AAACCGAGTCGATAGGATCCTTTAT
LOC_Os09g18020
OsAffx.29907.1.S1_at--181--6371Chr09:11029178..11029202 (25 bp)
GATCCTTTATCGGTGTGGGTATTGC
LOC_Os09g18020
OsAffx.29907.1.S1_at--111--6871Chr09:11029119..11029143 (25 bp)
GTTTGTGAGCTTCCTAACTCTCAGG
LOC_Os09g18020
OsAffx.29907.1.S1_at--138--2551Chr09:11029104..11029128 (25 bp)
AACTCTCAGGTATCATTGCTCAAAT
LOC_Os09g18020
Target Sequence 
GGATGTTCCTATATTGTCAACTCCTTGTGGAAGGTTCCAGATGCTGTGATGATATTTCTTCCCAAAGGCCAACAATGTCC
GGTAGTCATGCAATTGAAGGAAAGCCTGGAACAAGAGGAAGCTCATTGGGACACGTCTTCAATGTCCATGTTTGGTCCAT
CGGCAAGATGAAGAAACCATTGATACCTGGCTTCGGGACATAATGATGGTTCTCTGCTTTAAGTCTAAAATAAAACAACT
GATTTGCATAGACGATTAGTTCTGTGTTAAGACACAATGATTTATACAGTTTGTATTCATAAACCGAGTCGATAGGATCC
TTTATCGGTGTGGGTATTGCAATGCAATAGTTTGCTTCGGTGTAACAGTAAGCTGTTTGTGAGCTTCCTAACTCTCAGGT
ATCATTGCTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis