Browse Element(s) Details


OsAffx.29907.3.S1_at

Description tigr:9637.m01548
TID=OsAffx.29907.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1804011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18020OsAffx.29907.1.S1_at11/119+11029070..11038913Protein kinase domain containing protein, expressed
LOC_Os09g18030OsAffx.29907.2.S1_at11/119+11048168..11055785Protein kinase domain containing protein
LOC_Os09g18040OsAffx.29907.3.S1_at11/119+11058196..11059806Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18050NANA9+11067446..11067781hypothetical protein
LOC_Os09g18060NANA9+11070161..11070490hypothetical protein
LOC_Os09g18070OsAffx.29909.1.S1_at11/119+11074866..11076417hypothetical protein
LOC_Os09g18080OsAffx.7455.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.54787.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.48426.1.A1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080OsAffx.17770.1.S1_x_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29907.3.S1_at--277--10331Chr09:11058611..11058635 (25 bp)
TTTATGGCATTTCTCTTTGGGCAAT
LOC_Os09g18040
OsAffx.29907.3.S1_at--714--831Chr09:11058608..11058632 (25 bp)
ATGGCATTTCTCTTTGGGCAATAGG
LOC_Os09g18040
OsAffx.29907.3.S1_at--628--4951Chr09:11058605..11058629 (25 bp)
GCATTTCTCTTTGGGCAATAGGTTT
LOC_Os09g18040
OsAffx.29907.3.S1_at--309--10251Chr09:11058596..11058620 (25 bp)
TTTGGGCAATAGGTTTCATAAGCAT
LOC_Os09g18040
OsAffx.29907.3.S1_at--100--271Chr09:11058588..11058612 (25 bp)
ATAGGTTTCATAAGCATTGACTGCG
LOC_Os09g18040
OsAffx.29907.3.S1_at--419--1791Chr09:11058465..11058489 (25 bp)
ACCGTATACCGCAATCGCTGGTGGG
LOC_Os09g18040
OsAffx.29907.3.S1_at--807--9131Chr09:11058368..11058392 (25 bp)
TGCCCACCCATATCGGGTCGAAGTA
LOC_Os09g18040
OsAffx.29907.3.S1_at--808--9951Chr09:11058358..11058382 (25 bp)
TATCGGGTCGAAGTACTTGGTCAGG
LOC_Os09g18040
OsAffx.29907.3.S1_at--463--2531Chr09:11058315..11058339 (25 bp)
AACTACGACGGCATGGACAACCCAT
LOC_Os09g18040
OsAffx.29907.3.S1_at--322--5751Chr09:11058309..11058333 (25 bp)
GACGGCATGGACAACCCATCGCTAA
LOC_Os09g18040
OsAffx.29907.3.S1_at--1008--8511Chr09:11058302..11058326 (25 bp)
TGGACAACCCATCGCTAAAATTCAA
LOC_Os09g18040
Target Sequence 
TTTATGGCATTTCTCTTTGGGCAATAGGTTTCATAAGCATTGACTGCGGCCTGGAGGCAGACAGCAGCTACCTGGGCGAC
CTGACCGGCCTCACTTACGTCCCAGACGGCCCGTACATCGACGGCGGCGAGAATCAGAAGGTGACCACCGTATACCGCAA
TCGCTGGTGGGGCCCTGACACACGTACTCTCCACACGGTCAGGAGCTTCCCATCTGCCAAGGGTCAGCGCAACTGCTACT
CGCTGCCCACCCATATCGGGTCGAAGTACTTGGTCAGGCTGGATTTCTTGTATGGCAACTACGACGGCATGGACAACCCA
TCGCTAAAATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29907.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis