Browse Element(s) Details


Os.54787.1.S1_at

Description gb:AK106770.1
DB_XREF= gi:32991979
TID=Os.54787.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F08, full insert sequence.
FL= gb:AK106770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3881010/11Formin Homology 2 Domain containing protein, expressed
LOC_Os09g180801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38790Os.34174.1.S1_at11/114+22840341..22841839expressed protein
LOC_Os04g38790OsAffx.22650.1.S1_x_at1/114+22840341..22841839expressed protein
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54787.1.S1_at--636--4071Chr04:22859763..22859787 (25 bp)
CGAGCTCACCAACGTCAGGAAGACG
LOC_Os04g38810
Os.54787.1.S1_at--1003--4471Chr04:22859686..22859710 (25 bp)
GCCTGTCCCGGATCAAGGAGCTGGT
LOC_Os04g38810
Os.54787.1.S1_at--563--3932Chr09:11083713..11083831 (25 bp)
CGGCGACGAGAGGAACCAGTGCTTC
LOC_Os09g18080
Os.54787.1.S1_at--263--4591Chr04:22859543..22859567 (25 bp)
GCGCACGTCAGGGAGATCACCGAGT
LOC_Os04g38810
Os.54787.1.S1_at--644--431Chr04:22859474..22859498 (25 bp)
ATCTTCGTCATCGTCAGGGACTTCC
LOC_Os04g38810
Os.54787.1.S1_at--1148--2711Chr04:22859408..22859432 (25 bp)
AAGAATTGCCATGGCGGGAATCCTG
LOC_Os04g38810
Os.54787.1.S1_at--833--3031Chr04:22859390..22859414 (25 bp)
AATCCTGCCCTGAACCTGAACAATG
LOC_Os04g38810
Os.54787.1.S1_at--1057--6731Chr04:22859308..22859332 (25 bp)
GTTCTTGACATGATCTTGCCAGATT
LOC_Os04g38810
Os.54787.1.S1_at--1143--6551Chr04:22859263..22859287 (25 bp)
GATTACAAGCATCCAGCTCTTCATC
LOC_Os04g38810
Os.54787.1.S1_at--186--1591Chr04:22859249..22859273 (25 bp)
AGCTCTTCATCTATCCGAAGTTCCG
LOC_Os04g38810
Os.54787.1.S1_at--72--4231Chr04:22859235..22859259 (25 bp)
CCGAAGTTCCGATGTGCATTGCACA
NONE
Target Sequence 
CGAGCTCACCAACGTCAGGAAGACGGCGACCGTGGACCTGGACGTGCTCACCACCTCGGTGTCCGGCCTGTCGCACGGCC
TGTCCCGGATCAAGGAGCTGGTCGGGAGCGACCTGTCCGGCGACGAGAGGAACCAGTGCTTCGTGGCGTTCATGGCGCCG
TTCGTCGCCCACGCCGGTGAGGTGATCCGGGAGCTGGAGGACGGCGAGCGGCGGGTGCTGGCGCACGTCAGGGAGATCAC
CGAGTACTACCATGGCGACGTCGGCAAGGACGAGGCGAGCCCGCTCAGGATCTTCGTCATCGTCAGGGACTTCCTGGGGA
TGCTGGAGAGGGTGTGCAAGGAGGTGAGGGGAGCCAAGAATTGCCATGGCGGGAATCCTGCCCTGAACCTGAACAATGTA
TGATACCGCAAATATTGGGGTGAAAGAACAACATTGTAATTCTTGGCTTCGGATTGTTCTTGACATGATCTTGCCAGATT
AGAACAGATCAGTTCGTTTAGATTACAAGCATCCAGCTCTTCATCTATCCGAAGTTCCGATGTGCATTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis