Browse Element(s) Details


Os.4837.1.S1_at

Description gb:U65956.1
DB_XREF= gi:1519248
TID=Os.4837.1
CNT=100
FEA=FLmRNA
TIER=FL+Stack
STK=25
UG=Os.4837 (NCBI UniGene Cluster)
DEF=Oryza sativa GF14-b protein mRNA, complete cds.
PROD=GF14-b protein
FL= gb:AK071822.1 gb:AK071311.1 gb:AK062065.1 gb:U65956.1 gb:AK101938.1 gb:AK099243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3887011/1114-3-3-like protein GF14-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4837.1.S1_at--107--10852Chr04:22886484..22886508 (25 bp)
TTGGGCTAGCTCTTAACTTCTCAGT
LOC_Os04g38870
Os.4837.1.S1_at--497--8851Chr04:22886536..22886560 (25 bp)
TGATCGTGCTTGCAACCTCGCAAAG
LOC_Os04g38870
Os.4837.1.S1_at--246--8851Chr04:22887956..22887980 (25 bp)
TGATCATGCAACTCCTCCGTGATAA
LOC_Os04g38870
Os.4837.1.S1_at--1088--7511Chr04:22887990..22888128 (25 bp)
GTGGACTTCAGACATCTCGGAGGAC
LOC_Os04g38870
Os.4837.1.S1_at--979--391Chr04:22888141..22888165 (25 bp)
ATCAGGGAAGCTCCGAAGCGCGACT
LOC_Os04g38870
Os.4837.1.S1_at--1055--7031Chr04:22888179..22888203 (25 bp)
GTAAAGCCGGCTTTATGTGCCCTAG
LOC_Os04g38870
Os.4837.1.S1_at--956--10111Chr04:22888192..22888216 (25 bp)
TATGTGCCCTAGAAGCTTGTAGCTA
LOC_Os04g38870
Os.4837.1.S1_at--20--1571Chr04:22888212..22888236 (25 bp)
AGCTAGTGCTTTGCTACTGTGTAAT
LOC_Os04g38870
Os.4837.1.S1_at--385--1751Chr04:22888240..22888264 (25 bp)
ACCTATGTGGCTGTGATTGTTGTCG
LOC_Os04g38870
Os.4837.1.S1_at--533--4191Chr04:22888280..22888304 (25 bp)
CCCCGTATGTGAGGTTGCTAGCGAT
LOC_Os04g38870
Os.4837.1.S1_at--235--831Chr04:22888303..22888327 (25 bp)
ATGGTTTTGCAGTCTCGCCTTTAAG
LOC_Os04g38870
Target Sequence 
TTGGGCTAGCTCTTAACTTCTCAGTGTTCTACTATGAGATCCTCAACTCGCCTGATCGTGCTTGCAACCTCGCAAAGCAG
GCTTTTGATGAGGCCATCTCGGAGCTGGACACCCTGAGCGAGGAGTCCTACAAGGACAGCACTTTGATCATGCAACTCCT
CCGTGATAACCTGACCCTGTGGACTTCAGACATCTCGGAGGACACCGCGGAAGAGATCAGGGAAGCTCCGAAGCGCGACT
CCAGCGAGGGGCAGTAAAGCCGGCTTTATGTGCCCTAGAAGCTTGTAGCTAGTGCTTTGCTACTGTGTAATGACACCTAT
GTGGCTGTGATTGTTGTCGGGAAATCTGGGGCTCCCCCGTATGTGAGGTTGCTAGCGATGGTTTTGCAGTCTCGCCTTTA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis