Browse Element(s) Details


Os.50356.1.A1_at

Description gb:AK120857.1
DB_XREF= gi:37990480
TID=Os.50356.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024D23, full insert sequence.
FL= gb:AK120857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3891011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50356.1.A1_at--1022--8471Chr04:22901567..22901591 (25 bp)
TGGCGATGGACTGCACCGTGACCGT
LOC_Os04g38910
Os.50356.1.A1_at--641--5411Chr04:22901396..22901420 (25 bp)
GAAGCGTTGATCACTCAGCATAGTT
LOC_Os04g38910
Os.50356.1.A1_at--1107--3391Chr04:22901381..22901405 (25 bp)
CAGCATAGTTGCTCGTTCGGTAACT
LOC_Os04g38910
Os.50356.1.A1_at--372--7831Chr04:22901363..22901387 (25 bp)
GGTAACTCTATGAAAGGTCCTGAAT
LOC_Os04g38910
Os.50356.1.A1_at--263--10871Chr04:22901313..22901337 (25 bp)
TTGGCTGCGTCCTTGTGTTTGTCTT
LOC_Os04g38910
Os.50356.1.A1_at--989--7071Chr04:22901293..22901317 (25 bp)
GTCTTAGGAAATTACTTACGGTGTG
LOC_Os04g38910
Os.50356.1.A1_at--860--9931Chr04:22901277..22901301 (25 bp)
TACGGTGTGATGTTAATTCTTTGAA
LOC_Os04g38910
Os.50356.1.A1_at--259--191Chr04:22901243..22901267 (25 bp)
ATTTCTTGATACTTCTTTCATCGGA
LOC_Os04g38910
Os.50356.1.A1_at--1048--10291Chr04:22901228..22901252 (25 bp)
TTTCATCGGATTTCAATCGTCCGGT
LOC_Os04g38910
Os.50356.1.A1_at--638--3051Chr04:22901214..22901238 (25 bp)
AATCGTCCGGTTAGCTGCGTGTGTG
LOC_Os04g38910
Os.50356.1.A1_at--466--1711Chr04:22901132..22901156 (25 bp)
ACCACTACATGGTTGATGTCACTAT
LOC_Os04g38910
Target Sequence 
TGGCGATGGACTGCACCGTGACCGTGCCGGACCAGCGGCCGGCGATGCCGGAGATCGTCGTGCGCATCGAGCAGCTGGGC
GGCGCGGGCTCCGCGCGGACCGCCCGGAGCGTGTCGATGGACGACGCCGACGACCGGCCGCTCAGGCCCGCCGGGTCGAC
CCGCGAGAGCTGAAGCGTTGATCACTCAGCATAGTTGCTCGTTCGGTAACTCTATGAAAGGTCCTGAATTTTTTTTTCCT
TCATTTCATTTTTTTTGGCTGCGTCCTTGTGTTTGTCTTAGGAAATTACTTACGGTGTGATGTTAATTCTTTGAAGTTTC
ATGAATTTCTTGATACTTCTTTCATCGGATTTCAATCGTCCGGTTAGCTGCGTGTGTGTGTGTCTTGAGATGAGANGTTG
GTGATAGGAGAAGCACACTGGTGCAATATGTAATTACCACTACATGGTTGATGTCACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50356.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis