Browse Element(s) Details


Os.56226.1.S1_at

Description gb:AK109651.1
DB_XREF= gi:32994860
TID=Os.56226.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B01, full insert sequence.
FL= gb:AK109651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56226.1.S1_at--227--10411Chr04:22875692..22875716 (25 bp)
TTTTGTGATCGCTTGGACACTGCTC
LOC_Os04g38850
Os.56226.1.S1_at--323--2891Chr04:22875625..22875649 (25 bp)
AAGGGATCACTCGACCTACTGTGGG
LOC_Os04g38850
Os.56226.1.S1_at--822--7671Chr04:22875602..22875626 (25 bp)
GGGTTTTCAGATGTTCCTCACAAAC
LOC_Os04g38850
Os.56226.1.S1_at--405--3271Chr04:22875499..22875606 (25 bp)
CAAACACTTTCCTGATACCTTACAT
LOC_Os04g38850
Os.56226.1.S1_at--508--8511Chr04:22875475..22875499 (25 bp)
TGGCAATCCGACTCAATGATCCTGA
LOC_Os04g38850
Os.56226.1.S1_at--256--2791Chr04:22875402..22875426 (25 bp)
AAGAGGTGCTCCAATTGTCGGCCTA
LOC_Os04g38850
Os.56226.1.S1_at--25--6891Chr04:22875361..22875385 (25 bp)
GTATTTTGTCGATTGCTTGGGCACT
LOC_Os04g38850
Os.56226.1.S1_at--973--7531Chr04:22875309..22875333 (25 bp)
GGGCATTGCTGAACGCTGGCAGTAT
LOC_Os04g38850
Os.56226.1.S1_at--397--91Chr04:22875216..22875240 (25 bp)
ATTCCAGCCATGGTTGATCGCGGAC
LOC_Os04g38850
Os.56226.1.S1_at--553--9271Chr04:22875135..22875159 (25 bp)
TCCTGTTATTGGTCTTGTTGCCTAC
LOC_Os04g38850
Os.56226.1.S1_at--579--10691Chr04:22875118..22875142 (25 bp)
TTGCCTACCTGTTCTGCTTAGAGGA
LOC_Os04g38850
Target Sequence 
TTTTGTGATCGCTTGGACACTGCTCTTTGCGCCGCTTCTCTTCACGGATTCTAGGAGGGATCGGTTCAAGGGATCACTCG
ACCTACTGTGGGGTTTTCAGATGTTCCTCACAAACACTTTCCTGATACCTTACATGGCAATCCGACTCAATGATCCTGAC
AAGGACAAGTCTCCACCACAAACATCAAAATTGGGTTCAGTTATGGTAAGAGGTGCTCCAATTGTCGGCCTAACTGGTGG
CTTGGTCTGTATTTTGTCGATTGCTTGGGCACTCTCTGGTCGCGCGGATGCTAGTTTTGGGGGCATTGCTGAACGCTGGC
AGTATGTCCAAAGTTATGTCTTTTCAGAGCGGCTTGCTTATGCATTTCTTTGGGACATACTGCTGTATTCCATATTCCAG
CCATGGTTGATCGCGGACAATATTCAGAACGTGAAGGCAAGTGCTACTGAGTTTGTGAATTCAGTAAGGTTTCTTCCTGT
TATTGGTCTTGTTGCCTACCTGTTCTGCTTAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis