Browse Element(s) Details


OsAffx.4019.1.S1_at

Description tigr:9632.m03664
TID=OsAffx.4019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3880011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38790Os.34174.1.S1_at11/114+22840341..22841839expressed protein
LOC_Os04g38790OsAffx.22650.1.S1_x_at1/114+22840341..22841839expressed protein
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4019.1.S1_at--475--3911Chr04:22857809..22857833 (25 bp)
CTGGAGCTTGCTACGCCGCTTTGGG
LOC_Os04g38800
OsAffx.4019.1.S1_at--309--6351Chr04:22857887..22857911 (25 bp)
GATGCGGAGGATACCGTCGACAATG
LOC_Os04g38800
OsAffx.4019.1.S1_at--179--311Chr04:22857897..22857921 (25 bp)
ATACCGTCGACAATGGTGGTGATCG
LOC_Os04g38800
OsAffx.4019.1.S1_at--410--9151Chr04:22857931..22857955 (25 bp)
TGCCCATCCCCGTGGCGGTGTCGAT
LOC_Os04g38800
OsAffx.4019.1.S1_at--955--7451Chr04:22857948..22857972 (25 bp)
GTGTCGATGGCAGGCTCCGACTGCT
LOC_Os04g38800
OsAffx.4019.1.S1_at--703--1591Chr04:22858014..22858038 (25 bp)
AGCTCGCGGGTGAGCCAGCGGATGG
LOC_Os04g38800
OsAffx.4019.1.S1_at--148--1631Chr04:22858030..22858054 (25 bp)
AGCGGATGGTCTCGCAGTCCAACTT
LOC_Os04g38800
OsAffx.4019.1.S1_at--795--6251Chr04:22858034..22858058 (25 bp)
GATGGTCTCGCAGTCCAACTTGTCA
LOC_Os04g38800
OsAffx.4019.1.S1_at--214--5031Chr04:22858043..22858067 (25 bp)
GCAGTCCAACTTGTCACCTGAGTTG
LOC_Os04g38800
OsAffx.4019.1.S1_at--119--2511Chr04:22858050..22858074 (25 bp)
AACTTGTCACCTGAGTTGGCGCCGC
LOC_Os04g38800
OsAffx.4019.1.S1_at--302--8411Chr04:22858130..22858154 (25 bp)
GGCCTGCCCAGAGCGGCGGAAGGAG
LOC_Os04g38800
Target Sequence 
CTGGAGCTTGCTACGCCGCTTTGGGGTGGGCTCATCGCCGCGGGCAGCCGCCGCGACGGCGGAGGGCGACTCAGTGGGGA
TGCGGAGGATACCGTCGACAATGGTGGTGATCGCGGGCACGGTGCCCATCCCCGTGGCGGTGTCGATGGCAGGCTCCGAC
TGCTGCATGAACCAGCGGATGGTCTCGCTGTCGGACTTGTGCCCTAGCTCGCGGGTGAGCCAGCGGATGGTCTCGCAGTC
CAACTTGTCACCTGAGTTGGCGCCGCCGCCGCCGTCGCGTCGCCGCCTTGCTCTCCTCCCCACCCGTTGGGCGGCGGCGC
CGGCCTGCCCAGAGCGGCGGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis