Browse Element(s) Details


OsAffx.14196.1.S1_at

Description tigr:9632.m03670
TID=OsAffx.14196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3886011/11lysine and histidine specific transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14196.1.S1_at--1080--5991Chr04:22879934..22879958 (25 bp)
GAGACCCTCGAGACGATTCTGATCA
LOC_Os04g38860
OsAffx.14196.1.S1_at--944--4071Chr04:22879926..22879950 (25 bp)
CGAGACGATTCTGATCACCAGGATC
LOC_Os04g38860
OsAffx.14196.1.S1_at--952--6431Chr04:22879767..22879888 (25 bp)
GATCAGCCTACGTCGCGTTCACGCT
LOC_Os04g38860
OsAffx.14196.1.S1_at--1046--4631Chr04:22879753..22879777 (25 bp)
GCGTTCACGCTGTTCGTCGCGGTGA
LOC_Os04g38860
OsAffx.14196.1.S1_at--946--8931Chr04:22879731..22879755 (25 bp)
TGACGTTCCCGTTCTTCGGCGACCT
LOC_Os04g38860
OsAffx.14196.1.S1_at--819--4191Chr04:22879548..22879572 (25 bp)
CCCTGTATTCTGTGGCTGAAGATCA
LOC_Os04g38860
OsAffx.14196.1.S1_at--340--8991Chr04:22879532..22879556 (25 bp)
TGAAGATCAAGAAGCCTCCGAGGTT
LOC_Os04g38860
OsAffx.14196.1.S1_at--884--1011Chr04:22879512..22879536 (25 bp)
AGGTTCAGCGCGTCGTGGTTTGCCA
LOC_Os04g38860
OsAffx.14196.1.S1_at--987--4971Chr04:22879339..22879363 (25 bp)
GCATCGTCGTTGGAGTGCTGTTGAT
LOC_Os04g38860
OsAffx.14196.1.S1_at--1034--8851Chr04:22879318..22879342 (25 bp)
TGATGATCGCTTCCACCATCGGCGG
LOC_Os04g38860
OsAffx.14196.1.S1_at--561--491Chr04:22879301..22879325 (25 bp)
ATCGGCGGGCTACGAAGCATCATCC
LOC_Os04g38860
Target Sequence 
GAGACCCTCGAGACGATTCTGATCACCAGGATCAGGCTCCCTCCCGGGGCGCTCCTCCGCCTCGTCGCCCGATCAGCCTA
CGTCGCGTTCACGCTGTTCGTCGCGGTGACGTTCCCGTTCTTCGGCGACCTGCTCGGCTTCTTCGGCGGCTTCGGGTTCA
CGCCGACGTCCTACTTCCTCCCCTGTATTCTGTGGCTGAAGATCAAGAAGCCTCCGAGGTTCAGCGCGTCGTGGTTTGCC
AACTGGGGTTGCATCGTCGTTGGAGTGCTGTTGATGATCGCTTCCACCATCGGCGGGCTACGAAGCATCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis