Browse Element(s) Details


Os.57196.1.S1_at

Description gb:AK111125.1
DB_XREF= gi:32996334
TID=Os.57196.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C06, full insert sequence.
FL= gb:AK111125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3888011/11Dynein light chain type 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57196.1.S1_at--668--6471Chr04:22889418..22889442 (25 bp)
GATACAACATATGGGCCTGCTTGGC
LOC_Os04g38880
Os.57196.1.S1_at--907--10691Chr04:22889387..22889411 (25 bp)
TTGTCGGCACAAGCTTCGGTTCCTA
LOC_Os04g38880
Os.57196.1.S1_at--259--9931Chr04:22889364..22889388 (25 bp)
TACGTTACTCACTCCTTGGGAGGTT
LOC_Os04g38880
Os.57196.1.S1_at--1126--1011Chr04:22889344..22889368 (25 bp)
AGGTTTCTTGTACTTCTCTGTTGAC
LOC_Os04g38880
Os.57196.1.S1_at--349--1691Chr04:22889285..22889309 (25 bp)
AGCCACTAAGCTACCAACGATAATG
LOC_Os04g38880
Os.57196.1.S1_at--837--771Chr04:22889263..22889287 (25 bp)
ATGTGCGATATCTCTATCTACTGAA
LOC_Os04g38880
Os.57196.1.S1_at--22--891Chr04:22889152..22889176 (25 bp)
ATGGCCACTTCTCTACATGCTAATG
LOC_Os04g38880
Os.57196.1.S1_at--866--751Chr04:22889103..22889127 (25 bp)
ATGTAACTGCCATGTACCACGTGAG
LOC_Os04g38880
Os.57196.1.S1_at--867--1711Chr04:22889088..22889112 (25 bp)
ACCACGTGAGCTCCTGCTGTGTAAG
LOC_Os04g38880
Os.57196.1.S1_at--26--7451Chr04:22889070..22889094 (25 bp)
GTGTAAGCTCGCTTTTGACTTGCAA
LOC_Os04g38880
Os.57196.1.S1_at--216--5271Chr04:22889030..22889054 (25 bp)
GAAGTTTCCAAAGCTTTCCTGTGTC
LOC_Os04g38880
Target Sequence 
GATACAACATATGGGCCTGCTTGGCACTGCATTGTCGGCACAAGCTTCGGTTCCTACGTTACTCACTCCTTGGGAGGTTT
CTTGTACTTCTCTGTTGACAAGTTATACATTCTTCTCTTCAGAACAGCTGTTGAGCCACTAAGCTACCAACGATAATGTG
CGATATCTCTATCTACTGAAACAAAAGTGTAGATTCGATGCAATTTGTAATTTTGAACTGAAGTTGTATTAGATGCTCAA
CGAGTAGTAAGCTTGGGTAGAGGTAAATGGCCACTTCTCTACATGCTAATGCTAAATTGTAAGACAGCTAAGCTTATGTA
ACTGCCATGTACCACGTGAGCTCCTGCTGTGTAAGCTCGCTTTTGACTTGCAAAGCTGTAGCTTAACTGAAGTTTCCAAA
GCTTTCCTGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis