Browse Element(s) Details


Os.26548.1.S1_at

Description gb:AK059730.1
DB_XREF= gi:32969748
TID=Os.26548.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F09, full insert sequence.
FL= gb:AK059730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3894011/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26548.1.S1_at--627--2611Chr04:22915933..22915957 (25 bp)
AACCGCATGAGTATGGCCCTGTCGT
LOC_Os04g38940
Os.26548.1.S1_at--561--6931Chr04:22915897..22915921 (25 bp)
GTAGGAATCCTCAAGCTTGGCTCGA
LOC_Os04g38940
Os.26548.1.S1_at--781--71Chr04:22915537..22915561 (25 bp)
ATTGCGCTATCTTATGTCATTGGTG
LOC_Os04g38940
Os.26548.1.S1_at--452--3511Chr04:22915490..22915514 (25 bp)
CATGTTTATCTCCACAGCACAGAAC
LOC_Os04g38940
Os.26548.1.S1_at--766--1431Chr04:22915470..22915494 (25 bp)
AGAACGCCATGCTCACATCTGTCGG
LOC_Os04g38940
Os.26548.1.S1_at--401--471Chr04:22915454..22915478 (25 bp)
ATCTGTCGGTGTCACGCTGGTTGCA
LOC_Os04g38940
Os.26548.1.S1_at--164--3911Chr04:22915438..22915462 (25 bp)
CTGGTTGCACTACTTTTCTTTGGAT
LOC_Os04g38940
Os.26548.1.S1_at--616--7791Chr04:22915405..22915429 (25 bp)
GGTCGCTTTACTGGAAACCGTCCAT
LOC_Os04g38940
Os.26548.1.S1_at--574--2391Chr04:22915365..22915389 (25 bp)
AAACTGCTATTATCGGTGCGCTTGC
LOC_Os04g38940
Os.26548.1.S1_at--808--2611Chr04:22915290..22915314 (25 bp)
AACCCTCATGTGTTCCTGTCTGAAG
LOC_Os04g38940
Os.26548.1.S1_at--464--5471Chr04:22915253..22915277 (25 bp)
GAACTGAATCCAACGAAGCTGCAAT
LOC_Os04g38940
Target Sequence 
AACCGCATGAGTATGGCCCTGTCGTGGACGGGCTCCGTAGGAATCCTCAAGCTTGGCTCGACTTCATGATGAGGTTTGAG
CTGGGATTGGAGAAACCAGACCCTAAAAGAGCTATACAGAGCGCTTTAACAATTGCGCTATCTTATGTCATTGGTGGACT
GGTCCCTCTCCTTCCCTACATGTTTATCTCCACAGCACAGAACGCCATGCTCACATCTGTCGGTGTCACGCTGGTTGCAC
TACTTTTCTTTGGATACATCAAGGGTCGCTTTACTGGAAACCGTCCATTCCTCAGCGCTGTCCAAACTGCTATTATCGGT
GCGCTTGCTTCTGCTGCGGCATATGGAATGGCCAAGGCCGTGCAAACTANATGATTTGAACCCTCATGTGTTCCTGTCTG
AAGTTTCAGTAGGCAGAACTGAATCCAACGAAGCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis