Browse Element(s) Details


Os.33954.2.S1_at

Description gb:AK067018.1
DB_XREF= gi:32977036
TID=Os.33954.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091D20, full insert sequence.
FL= gb:AK067018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33954.2.S1_at--943--991Chr04:22927909..22927933 (25 bp)
AGGATGCAGCGAACCGAGAGATCTT
LOC_Os04g38960
Os.33954.2.S1_at--341--651Chr04:22927912..22927936 (25 bp)
ATGCAGCGAACCGAGAGATCTTCCT
LOC_Os04g38960
Os.33954.2.S1_at--772--10071Chr04:22928187..22928211 (25 bp)
TAGTGGCATTGGCTTGCCCACAAAC
LOC_Os04g38960
Os.33954.2.S1_at--541--7531Chr04:22928189..22928213 (25 bp)
GTGGCATTGGCTTGCCCACAAACAC
LOC_Os04g38960
Os.33954.2.S1_at--1051--2391Chr04:22928208..22928232 (25 bp)
AAACACCTCCAGATCATTTCGTATG
LOC_Os04g38960
Os.33954.2.S1_at--85--1771Chr04:22928212..22928236 (25 bp)
ACCTCCAGATCATTTCGTATGCTCT
LOC_Os04g38960
Os.33954.2.S1_at--411--6431Chr04:22928219..22928243 (25 bp)
GATCATTTCGTATGCTCTGTAATAG
LOC_Os04g38960
Os.33954.2.S1_at--527--631Chr04:22928230..22928254 (25 bp)
ATGCTCTGTAATAGTGTAGTTTTGC
LOC_Os04g38960
Os.33954.2.S1_at--768--6931Chr04:22928245..22928269 (25 bp)
GTAGTTTTGCTGATTGGTGGTTGCT
LOC_Os04g38960
Os.33954.2.S1_at--135--6571Chr04:22928256..22928280 (25 bp)
GATTGGTGGTTGCTAAAATTAGATC
LOC_Os04g38960
Os.33954.2.S1_at--989--2431Chr04:22928270..22928294 (25 bp)
AAAATTAGATCGTGTCAATTCCTGT
LOC_Os04g38960
Target Sequence 
AGGATGCAGCGAACCGAGAGATCTTCCTTTCCTACGATCTCAGGCTTCGCACGCTGTGGATCAAGAGGGAAGTCAACAGG
TTACTCACTTGATCAAGTGGATTGCCGCATCTTGTTGCCCTTCGTCTCCGGAAGATTAGATGAACGTAGAAACTATAATT
ATTATGGATCAGCTGAAAGTCATGAACTGATCGATTTGCTAAAATTATGGATCGGGTCAGATCTGAACCTAGGAGTCATG
CAAGTCGTCAAGCACTCGTTTTCCCTATGCTCAGTGCTTAGTGGCATTGGCTTGCCCACAAACACCTCCAGATCATTTCG
TATGCTCTGTAATAGTGTAGTTTTGCTGATTGGTGGTTGCTAAAATTAGATCGTGTCAATTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33954.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis