Browse Element(s) Details


Os.50287.1.S1_at

Description gb:AK120542.1
DB_XREF= gi:37990165
TID=Os.50287.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129I02, full insert sequence.
FL= gb:AK120542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3901011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed
LOC_Os04g39050Os.54556.1.S1_at11/114+22971841..22973132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50287.1.S1_at--866--7571Chr04:22946685..22946709 (25 bp)
GGGCGTGGTTGAATAATGCAGCAAA
LOC_Os04g39010
Os.50287.1.S1_at--151--1091Chr04:22946775..22946799 (25 bp)
AGGGCGTCCGGCGTGAACTCGATGG
LOC_Os04g39010
Os.50287.1.S1_at--871--3791Chr04:22946874..22946898 (25 bp)
CTCCGCAGGAAGATCGGCTACGCCG
LOC_Os04g39010
Os.50287.1.S1_at--281--4851Chr04:22946890..22946914 (25 bp)
GCTACGCCGAGATCGTTCAGGTGGA
LOC_Os04g39010
Os.50287.1.S1_at--48--371Chr04:22947057..22947081 (25 bp)
ATCAATCATAGAGTTCGATCGATCG
LOC_Os04g39010
Os.50287.1.S1_at--712--6711Chr04:22947069..22947093 (25 bp)
GTTCGATCGATCGAGTTTTGCAGTA
LOC_Os04g39010
Os.50287.1.S1_at--636--6071Chr04:22947081..22947105 (25 bp)
GAGTTTTGCAGTAATTTCTTCAGCA
LOC_Os04g39010
Os.50287.1.S1_at--1053--10511Chr04:22947099..22947123 (25 bp)
TTCAGCAATTGATCAGTAGTACAGT
LOC_Os04g39010
Os.50287.1.S1_at--396--7031Chr04:22947117..22947141 (25 bp)
GTACAGTACATCGATCGAGTGAACG
LOC_Os04g39010
Os.50287.1.S1_at--44--211Chr04:22947151..22947175 (25 bp)
ATTTGCTGTTTCCTCACTTAATTGG
LOC_Os04g39010
Os.50287.1.S1_at--93--5531Chr04:22947180..22947204 (25 bp)
GAAAACTACAACACTTGGATATATC
LOC_Os04g39010
Target Sequence 
GGGCGTGGTTGAATAATGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCATGGC
GCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACG
GCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAGGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAG
GACAAGAAGCCGGAGGAGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTACCC
GCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAATCATAGAGTTCGATCGATCGAGT
TTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACAGTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCT
CACTTAATTGGAAATGAAAACTACAACACTTGGATATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis