Browse Element(s) Details


Os.32953.1.S2_at

Description gb:AK068918.1
DB_XREF= gi:32978942
TID=Os.32953.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169C17, full insert sequence.
FL= gb:AK068918.1 gb:AK102269.1 gb:AK064338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32953.1.S2_at--825--7871Chr04:22930500..22930524 (25 bp)
GGTTTTGCCCTGTAATTGGACCAGA
LOC_Os04g38970
Os.32953.1.S2_at--850--8091Chr04:22930483..22930507 (25 bp)
GGACCAGATATTCCCTACAATCACT
LOC_Os04g38970
Os.32953.1.S2_at--858--2191Chr04:22930431..22930455 (25 bp)
ACAACGGTTGCAAGCTGTTTTCAGA
LOC_Os04g38970
Os.32953.1.S2_at--459--431Chr04:22930401..22930425 (25 bp)
ATCTCTTAGAAGGTTTCCTGGCCAC
LOC_Os04g38970
Os.32953.1.S2_at--474--8451Chr04:22930383..22930407 (25 bp)
TGGCCACTTCCACCATTAAGATTTG
LOC_Os04g38970
Os.32953.1.S2_at--271--7911Chr04:22930325..22930349 (25 bp)
GGATTTAACCTTCCATGTTGTGGTT
LOC_Os04g38970
Os.32953.1.S2_at--325--7891Chr04:22930304..22930328 (25 bp)
GGTTAATCAATAGTCTGCCAGGGTT
LOC_Os04g38970
Os.32953.1.S2_at--847--7871Chr04:22930279..22930303 (25 bp)
GGTTTTATCATCCTGACTTTGGCAA
LOC_Os04g38970
Os.32953.1.S2_at--251--9631Chr04:22929288..22929312 (25 bp)
TCAGGCGTTAATGTCTGGTGCAAAC
LOC_Os04g38970
Os.32953.1.S2_at--81--7351Chr04:22929271..22929295 (25 bp)
GTGCAAACGTGCAGGTTGTCCGTAG
LOC_Os04g38970
Os.32953.1.S2_at--16--2251Chr04:22929244..22929268 (25 bp)
AAATTCTTTGGTGCCTGTTTGTGTA
LOC_Os04g38970
Target Sequence 
GGTTTTGCCCTGTAATTGGACCAGATATTCCCTACAATCACTCCTAATACTAAATATTTTAAAGAACATACAACGGTTGC
AAGCTGTTTTCAGAATTATATCTCTTAGAAGGTTTCCTGGCCACTTCCACCATTAAGATTTGAATTTTTTTTTTCAATTT
TTAGTATATTTCATTGGATTTAACCTTCCATGTTGTGGTTAATCAATAGTCTGCCAGGGTTGGTTTTATCATCCTGACTT
TGGCAAGGAAGGAATTGACTCTAATTTCGGTTAAGAGTCAGTTAAGTTGAGCAATGAATCAACATTACCCAAGAACCCGG
TACAAGTCGGATTGTTCTTTTGCTGGAAGTGTCAGGCGTTAATGTCTGGTGCAAACGTGCAGGTTGTCCGTAGTTAAATT
CTTTGGTGCCTGTTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32953.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis