Browse Element(s) Details


OsAffx.4020.1.S1_at

Description tigr:9632.m03680
TID=OsAffx.4020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3893011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4020.1.S1_at--532--9511Chr04:22913801..22913825 (25 bp)
TCTCAGGCCAGACACGGTTACTTAT
LOC_Os04g38930
OsAffx.4020.1.S1_at--805--6771Chr04:22913817..22913841 (25 bp)
GTTACTTATACTACCCTCATTGATG
LOC_Os04g38930
OsAffx.4020.1.S1_at--1112--9951Chr04:22913828..22913852 (25 bp)
TACCCTCATTGATGGTTATTGCAAG
LOC_Os04g38930
OsAffx.4020.1.S1_at--183--7771Chr04:22913921..22913945 (25 bp)
GGTGACATATACAGCACTCATATCA
LOC_Os04g38930
OsAffx.4020.1.S1_at--1160--1491Chr04:22913933..22913957 (25 bp)
AGCACTCATATCAGGGCTGAGCAAG
LOC_Os04g38930
OsAffx.4020.1.S1_at--553--4051Chr04:22913964..22913988 (25 bp)
CGATCAGCTGATGCCGAGAGAGTTC
LOC_Os04g38930
OsAffx.4020.1.S1_at--802--10231Chr04:22914011..22914035 (25 bp)
TTTGGAGCCTGATAACACGACCTAC
LOC_Os04g38930
OsAffx.4020.1.S1_at--517--2451Chr04:22914024..22914048 (25 bp)
AACACGACCTACACAATGGTGATTG
LOC_Os04g38930
OsAffx.4020.1.S1_at--892--7751Chr04:22914041..22914065 (25 bp)
GGTGATTGATGCTTTCTGTAGGAAA
LOC_Os04g38930
OsAffx.4020.1.S1_at--730--8091Chr04:22914068..22914092 (25 bp)
GGACGTGAAGACAGGCCTTAGACTC
LOC_Os04g38930
OsAffx.4020.1.S1_at--919--5651Chr04:22914077..22914101 (25 bp)
GACAGGCCTTAGACTCCTGAAGGAA
LOC_Os04g38930
Target Sequence 
TCTCAGGCCAGACACGGTTACTTATACTACCCTCATTGATGGTTATTGCAAGGAAGAAGAGTTAGACATGGCGATGGAGA
TTAAACAGAATATGGTGGCTGAAGGGGTTGGATTGGATGAGGTGACATATACAGCACTCATATCAGGGCTGAGCAAGGCA
GGGCGATCAGCTGATGCCGAGAGAGTTCTGGGTGAGATGATGGAGGCTGGTTTGGAGCCTGATAACACGACCTACACAAT
GGTGATTGATGCTTTCTGTAGGAAAGGGGACGTGAAGACAGGCCTTAGACTCCTGAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis