Browse Element(s) Details


Os.32013.1.S1_a_at

Description gb:AK061324.1
DB_XREF= gi:32971342
TID=Os.32013.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G03, full insert sequence.
FL= gb:AK058481.1 gb:AK061324.1 gb:AK099100.1 gb:AK102579.1 gb:AK059483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3890011/11SPFH domain/Band 7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32013.1.S1_a_at--200--4971Chr04:22898139..22898163 (25 bp)
GCATCGAGTTCTCGCAGGCCGTCGA
LOC_Os04g38900
Os.32013.1.S1_a_at--530--8391Chr04:22898090..22898114 (25 bp)
GGCCGAGCGCTCCAAGTTCCTCGTG
LOC_Os04g38900
Os.32013.1.S1_a_at--70--3231Chr04:22898078..22898102 (25 bp)
CAAGTTCCTCGTGGCCAAGGCTGAG
LOC_Os04g38900
Os.32013.1.S1_a_at--80--9271Chr04:22898073..22898097 (25 bp)
TCCTCGTGGCCAAGGCTGAGCAGGA
LOC_Os04g38900
Os.32013.1.S1_a_at--373--1151Chr04:22898010..22898034 (25 bp)
AGTCCGCGCGGCTCATTTCTGAGGC
LOC_Os04g38900
Os.32013.1.S1_a_at--708--4571Chr04:22898005..22898029 (25 bp)
GCGCGGCTCATTTCTGAGGCCACCG
LOC_Os04g38900
Os.32013.1.S1_a_at--99--4531Chr04:22897978..22898002 (25 bp)
GCCGCTGGGACAGGGCTGATTGAGC
LOC_Os04g38900
Os.32013.1.S1_a_at--371--6051Chr04:22897930..22897954 (25 bp)
GAGATTGCTGCCGAGCTGGCCCGTT
LOC_Os04g38900
Os.32013.1.S1_a_at--417--5891Chr04:22897918..22897942 (25 bp)
GAGCTGGCCCGTTCTCCTAATGTTG
LOC_Os04g38900
Os.32013.1.S1_a_at--555--9771Chr04:22897901..22897925 (25 bp)
TAATGTTGCATACGTTCCTGCTGGG
LOC_Os04g38900
Os.32013.1.S1_a_at--125--5611Chr04:22897876..22897900 (25 bp)
GACAATGGCCGGATGCTGCTCGGCC
LOC_Os04g38900
Target Sequence 
GCATCGAGTTCTCGCAGGCCGTCGAGAAGAAGCAGGTGGCGCAGCAGGAGGCCGAGCGCTCCAAGTTCCTCGTGGCCAAG
GCTGAGCAGGAGAGGCGCGCGGCCATCGTGCGCGCGGAGGGAGAGAGTGAGTCCGCGCGGCTCATTTCTGAGGCCACCGC
CGCCGCTGGGACAGGGCTGATTGAGCTGAGGAGGATCGAGGCGGCCAGGGAGATTGCTGCCGAGCTGGCCCGTTCTCCTA
ATGTTGCATACGTTCCTGCTGGGGACAATGGCCGGATGCTGCTCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32013.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis