Browse Element(s) Details


OsAffx.26381.1.S1_at

Description tigr:9632.m03679
TID=OsAffx.26381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3892011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26381.1.S1_at--181--2611Chr04:22909959..22909983 (25 bp)
AACGCGGACGCCACGGTGCAGGCAT
LOC_Os04g38920
OsAffx.26381.1.S1_at--48--1831Chr04:22909966..22909990 (25 bp)
ACGCCACGGTGCAGGCATTGCGCGT
LOC_Os04g38920
OsAffx.26381.1.S1_at--444--7171Chr04:22910001..22910025 (25 bp)
GTCTGCGCCGTGTGCGGGACGAAGA
LOC_Os04g38920
OsAffx.26381.1.S1_at--890--8691Chr04:22910011..22910035 (25 bp)
TGTGCGGGACGAAGATACTGGCCCT
LOC_Os04g38920
OsAffx.26381.1.S1_at--997--4651Chr04:22910014..22910038 (25 bp)
GCGGGACGAAGATACTGGCCCTGAA
LOC_Os04g38920
OsAffx.26381.1.S1_at--713--8091Chr04:22910017..22910041 (25 bp)
GGACGAAGATACTGGCCCTGAAGAA
LOC_Os04g38920
OsAffx.26381.1.S1_at--255--1191Chr04:22910023..22910047 (25 bp)
AGATACTGGCCCTGAAGAAGAAAGG
LOC_Os04g38920
OsAffx.26381.1.S1_at--192--4231Chr04:22910101..22910125 (25 bp)
CCGACAAGCCGGTCGCGAGGTCGCT
LOC_Os04g38920
OsAffx.26381.1.S1_at--375--1291Chr04:22910344..22910368 (25 bp)
AGATCGCGTGCCTCCGCAACGAGAA
LOC_Os04g38920
OsAffx.26381.1.S1_at--151--6391Chr04:22910345..22910369 (25 bp)
GATCGCGTGCCTCCGCAACGAGAAG
LOC_Os04g38920
OsAffx.26381.1.S1_at--509--891Chr04:22910386..22910410 (25 bp)
AGGCGCGGCAGTTCCGGGAGATGGC
LOC_Os04g38920
Target Sequence 
AACGCGGACGCCACGGTGCAGGCATTGCGCGTCGGCGGCGTCGTCTGCGCCGTGTGCGGGACGAAGATACTGGCCCTGAA
GAAGAAAGGCGGCCTGCCCCCGTCCCCGACCCCGTCCCCGGCCCGCTCCAAGGGGAGCTGCTCCGACAAGCCGGTCGCGA
GGTCGCTGGCCGCCGAGCTGGAGCAGGAGGCCAACGCGGAGGAAGACGAGTGCGCGGCGGCCGGCGACGCGAACGGCGGC
TGCGGCAGCGGTGCGGAGGAGGGCGGCAGCGTGGAGCGGCTGAGGCGCCGGCTCGCGGCCGAGAGGAGGCGGAGGGAGGC
CGCGCTGGAGGAGCTGGAGAAGGAGAGGCGCGCGGCGGCGTCCGCGGCCGACGAGGCCATGGCCAAGATCGCGTGCCTCC
GCAACGAGAAGGCGCTGGTGGAGCGCGAGGCGCGGCAGTTCCGGGAGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis