Browse Element(s) Details


OsAffx.14197.1.S1_at

Description tigr:9632.m03676
TID=OsAffx.14197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3889011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14197.1.S1_at--985--4511Chr04:22894098..22894122 (25 bp)
GCCCCTGGTGCGTTTGACAAACTGT
LOC_Os04g38890
OsAffx.14197.1.S1_at--989--3991Chr04:22894128..22894152 (25 bp)
CGTGCGAGTTGCGACCATCGCAAAC
LOC_Os04g38890
OsAffx.14197.1.S1_at--288--4511Chr04:22894162..22894186 (25 bp)
GCCGAGTCGCCGTCCGAATCCGGAA
LOC_Os04g38890
OsAffx.14197.1.S1_at--334--2311Chr04:22894198..22894222 (25 bp)
AAAGGCGGAAAGCATCCCATGCGGC
LOC_Os04g38890
OsAffx.14197.1.S1_at--555--5991Chr04:22894226..22894250 (25 bp)
GAGACCAGCAGAGGATCGCGTCACG
LOC_Os04g38890
OsAffx.14197.1.S1_at--937--531Chr04:22894240..22894264 (25 bp)
ATCGCGTCACGCGAATTGGCCGCGG
LOC_Os04g38890
OsAffx.14197.1.S1_at--948--8071Chr04:22894271..22894295 (25 bp)
GGAGCTGGACCAAAATCTCACGGCT
LOC_Os04g38890
OsAffx.14197.1.S1_at--1080--3051Chr04:22894284..22894308 (25 bp)
AATCTCACGGCTCCCTACGGATGGA
LOC_Os04g38890
OsAffx.14197.1.S1_at--249--7231Chr04:22894332..22894356 (25 bp)
GTCCTGGCTCGCACAGTCGGGTTCC
LOC_Os04g38890
OsAffx.14197.1.S1_at--310--7891Chr04:22894351..22894375 (25 bp)
GGTTCCGCGGTGGAACAAGTCCACT
LOC_Os04g38890
OsAffx.14197.1.S1_at--1158--8511Chr04:22894361..22894385 (25 bp)
TGGAACAAGTCCACTCCGCATTCTT
LOC_Os04g38890
Target Sequence 
GCCCCTGGTGCGTTTGACAAACTGTCGGGGCGTGCGAGTTGCGACCATCGCAAACCCGCCCCTCGCCGAGTCGCCGTCCG
AATCCGGAAGCCGGTGGGGGAAAGGCGGAAAGCATCCCATGCGGCCCCGAGACCAGCAGAGGATCGCGTCACGCGAATTG
GCCGCGGGAGGAAGGAGCTGGACCAAAATCTCACGGCTCCCTACGGATGGAGACGGAAGGGTCGCACGGGCCGCGTCCTG
GCTCGCACAGTCGGGTTCCGCGGTGGAACAAGTCCACTCCGCATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis