Browse Element(s) Details


Os.54798.1.S1_at

Description gb:AK106790.1
DB_XREF= gi:32991999
TID=Os.54798.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A06, full insert sequence.
FL= gb:AK106790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3884011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed
LOC_Os04g38820NANA4+22866878..22868862GRF zinc finger family protein
LOC_Os04g38830NANA4+22869868..22872598transposon protein, putative, Mutator sub-class
LOC_Os04g38840Os.54798.1.S1_at11/114+22874051..22874963Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g38850Os.56226.1.S1_at11/114+22875051..22876839expressed protein
LOC_Os04g38860OsAffx.14196.1.S1_at11/114+22879269..22882892lysine and histidine specific transporter, putative, expressed
LOC_Os04g38870Os.4837.1.S1_at11/114+22884939..2288848714-3-3-like protein GF14-6, putative, expressed
LOC_Os04g38880Os.57196.1.S1_at11/114+22889027..22891634Dynein light chain type 1 family protein, expressed
LOC_Os04g38890OsAffx.14197.1.S1_at11/114+22894038..22894418hypothetical protein
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54798.1.S1_at--293--7211Chr04:22874301..22874325 (25 bp)
GTCGAACACGTGCTGCGCCAACCTG
LOC_Os04g38840
Os.54798.1.S1_at--153--2631Chr04:22874320..22874344 (25 bp)
AACCTGGGCAGCATGGTGCACGACG
LOC_Os04g38840
Os.54798.1.S1_at--1145--1791Chr04:22874470..22874641 (25 bp)
ACCGCCTGCCCAGGGTTTGATCTAG
LOC_Os04g38840
Os.54798.1.S1_at--124--5151Chr04:22874742..22874766 (25 bp)
GCAACAGATGACACCGTCACCGAAG
LOC_Os04g38840
Os.54798.1.S1_at--300--7111Chr04:22874757..22874781 (25 bp)
GTCACCGAAGACAAGCAGCCAGACG
LOC_Os04g38840
Os.54798.1.S1_at--30--2151Chr04:22874789..22874813 (25 bp)
ACAGCAGCGGGCTCAAGCTGATAGC
LOC_Os04g38840
Os.54798.1.S1_at--337--2691Chr04:22874803..22874827 (25 bp)
AAGCTGATAGCTGACTGCGTTCCTG
LOC_Os04g38840
Os.54798.1.S1_at--104--6711Chr04:22874821..22874845 (25 bp)
GTTCCTGTCGCACTTGGTTTTATGG
LOC_Os04g38840
Os.54798.1.S1_at--329--2071Chr04:22874832..22874856 (25 bp)
ACTTGGTTTTATGGCGTTGGTGTCA
LOC_Os04g38840
Os.54798.1.S1_at--413--6631Chr04:22874847..22874871 (25 bp)
GTTGGTGTCAGCTCTGACATTCTGA
LOC_Os04g38840
Os.54798.1.S1_at--1067--5951Chr04:22874902..22874926 (25 bp)
GAGAAGTTATTTAGTTGTCCCCTGT
LOC_Os04g38840
Target Sequence 
GTCGAACACGTGCTGCGCCAACCTGGGCAGCATGGTGCACGACGAGCCGCTCTGCCTCTGCCAGGCCCTCAGCCAGTCCG
GCGGCGGCGGCGCGATCCCGGTGCCCGTGAACCGGACGCGCGCGGTGCAGCTGCCTCTCCTCTGCCGCCTCGACCTCCCG
CCGGCGGCCACCGCCTGCCCAGGGTTTGATCTAGGGGGAGCAGCGCCATCGCCGCCGGTGAGCGTCCCGCGCTCGACGCC
GAACTCCACTGCTCCATCGACGCCGACGCCGGTGACGGTGACACGGGCGCCGCCGCAACAGATGACACCGTCACCGAAGA
CAAGCAGCCAGACGCCGGAATACAGCAGCGGGCTCAAGCTGATAGCTGACTGCGTTCCTGTCGCACTTGGTTTTATGGCG
TTGGTGTCAGCTCTGACATTCTGAAGACTTAGGGGAGATTAGAATTGTGCCGTAGAGAAGTTATTTAGTTGTCCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis