Browse Element(s) Details


Os.53838.1.S1_at

Description gb:AK100348.1
DB_XREF= gi:32985557
TID=Os.53838.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082M18, full insert sequence.
FL= gb:AK100348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g389806/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53838.1.S1_at--486--5351Chr04:22934952..22934975 (24 bp)
GAAGACCCAACTTTTATCTAGCTGA
LOC_Os04g38980
Os.53838.1.S1_at--918--431Chr04:22934829..22934960 (25 bp)
ATCTAGCTGAACTTCCCATGTGGAA
LOC_Os04g38980
Os.53838.1.S1_at--478--951Chr04:22934805..22934829 (25 bp)
AGGACATATCTCGTACCAGAGCTAT
LOC_Os04g38980
Os.53838.1.S1_at--1109--2432Chr04:18802475..18802980 (25 bp)
AAAATCTCCACATGCTTTTGGTGCC
NONE
Os.53838.1.S1_at--275--1891Chr04:22934721..22934745 (25 bp)
ACGATCCGAGCTAGTGGCGCTGGTA
LOC_Os04g38980
Os.53838.1.S1_at--250--3911Chr04:22934702..22934726 (25 bp)
CTGGTAGCACTTCACTGGAGCAAAT
LOC_Os04g38980
Os.53838.1.S1_at--136--9531Chr04:22934647..22934671 (25 bp)
TCTCTTCTTTTGGATGTGCGCACCA
NONE
Os.53838.1.S1_at--864--6811Chr04:22934619..22934643 (25 bp)
GTTTTTGCAATGCATTCGCCTGGAA
NONE
Os.53838.1.S1_at--823--9311Chr04:22934520..22934544 (25 bp)
TCCCTTTGCAGTGTACATGACGTCT
NONE
Os.53838.1.S1_at--1114--7591Chr04:22934485..22934509 (25 bp)
GGGCACCCGTGTATACGAGTGTAAC
NONE
Os.53838.1.S1_at--315--7451Chr04:22934467..22934491 (25 bp)
GTGTAACTCTAAACGCAGTCTCTCT
NONE
Target Sequence 
GAAGACCCAACTTTTATCTAGCTGAACTTCCCATGTGGAAGGACATATCTCGTACCAGAGCTATGAGGTAGAGTGGGTTA
TCATACCAAAATCTCCACATGCTTTTGGTGCCACATACCCACAACGATCCGAGCTAGTGGCGCTGGTAGCACTTCACTGG
AGCAAATGATAGTAGCCGCATATGCAGGTGTGCACCCTCTCTTCTTTTGGATGTGCGCACCAACTGTTTTTGCAATGCAT
TCGCCTGGAATGGGTGTGGGAAATAAAATTTATGGACCTCATATAATTTGGGATTCTTTGGTGTCTTCATGTCATGTACT
CACGTCCCTTTGCAGTGTACATGACGTCTAAAGGATTAGGGGCACCCGTGTATACGAGTGTAACTCTAAACGCAGTCTCT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis