Browse Element(s) Details


Os.5519.1.S1_at

Description gb:AK069067.1
DB_XREF= gi:32979091
TID=Os.5519.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008O13, full insert sequence.
FL= gb:AK069067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3904010/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed
LOC_Os04g39050Os.54556.1.S1_at11/114+22971841..22973132expressed protein
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5519.1.S1_at--1147--5431Chr04:22971101..22971125 (25 bp)
GAACCCCGCAGGTCCGTTGGAATAG
LOC_Os04g39040
Os.5519.1.S1_at--714--5211Chr04:22971120..22971144 (25 bp)
GAATAGTTGTGGACGACTCGCTCCC
LOC_Os04g39040
Os.5519.1.S1_at--700--9771Chr04:22971162..22971186 (25 bp)
TAAGGCTGGCCGATGGCACTCGCAT
LOC_Os04g39040
Os.5519.1.S1_at--699--7571NONE
GGGCGACATCAAGGTCTTTCATCGA
NONE
Os.5519.1.S1_at--440--2951Chr04:22971262..22971286 (25 bp)
AAGGCCCTATCAGCTGCAGACTGGT
LOC_Os04g39040
Os.5519.1.S1_at--953--8591Chr04:22971334..22971358 (25 bp)
TGGTCTGGCGAACTCTGTCATCATT
LOC_Os04g39040
Os.5519.1.S1_at--643--8251Chr04:22971378..22971402 (25 bp)
GGCACGTCTCATATGCTATCTTTGA
LOC_Os04g39040
Os.5519.1.S1_at--887--4251Chr04:22971412..22971436 (25 bp)
CCGGTGTCCTTAAATTGTCGATTAT
LOC_Os04g39040
Os.5519.1.S1_at--671--1391Chr04:22971477..22971501 (25 bp)
AGACTGCTGGTTTCATCGACAGACA
LOC_Os04g39040
Os.5519.1.S1_at--974--2371Chr04:22971585..22971609 (25 bp)
AAACTGTCGTGCCTCAATTTGATCC
LOC_Os04g39040
Os.5519.1.S1_at--667--6371Chr04:22971605..22971629 (25 bp)
GATCCTGACTAATTGTTGCTTGAAA
LOC_Os04g39040
Target Sequence 
GAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCATTTNACATCCATACAGCTAAGGCTGGCCGATGGCA
CTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAAGGTCTTTCATCGACGCCTCTCGGCCTGGGGC
TACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTC
TGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAAGAACCCGGTGT
CCTTAAATTGTCGATTATCATGCCAGATACTNGTACTGGAATACATTCTGCATCGAACCAGACTGCTGGTTTCATCGACA
GACAGACGATAACNATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTANTTAATAGTAATTACCTGA
ATTGCAANAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis