Browse Element(s) Details


Os.54692.1.S1_at

Description gb:AK106481.1
DB_XREF= gi:32991690
TID=Os.54692.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F02, full insert sequence.
FL= gb:AK106481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3598011/11expressed protein
LOC_Os04g390601/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein
LOC_Os05g35910NANA5+21211761..21212559hypothetical protein
LOC_Os05g35920OsAffx.27192.1.S1_x_at11/115+21213580..21214003hypothetical protein
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54692.1.S1_at--489--8011Chr05:21236412..21236436 (25 bp)
GGAGGTGAGGTCTTCCCCATTTGCT
LOC_Os05g35980
Os.54692.1.S1_at--526--2991Chr05:21236126..21236150 (25 bp)
AATGATTTTACCACACAACAGCAAA
LOC_Os05g35980
Os.54692.1.S1_at--1042--2352Chr02:16825593..16825617 (25 bp)
AAAGCTGTTGCCATCTGCCGGCATT
NONE
Os.54692.1.S1_at--854--152Chr05:21236082..21236106 (25 bp)
ATTATCTCAGGTTTGCTTTTCCGCA
LOC_Os05g35980
Os.54692.1.S1_at--1051--1011Chr05:21236074..21236098 (25 bp)
AGGTTTGCTTTTCCGCATCCTTCTC
LOC_Os05g35980
Os.54692.1.S1_at--509--571Chr05:21236058..21236082 (25 bp)
ATCCTTCTCTCCTTATCAATTTCTT
LOC_Os05g35980
Os.54692.1.S1_at--572--7292Chr02:16825667..16825690 (24 bp)
GTGCCCCTTGTCAGATTGCATTTAC
NONE
Os.54692.1.S1_at--627--1251Chr05:21236018..21236042 (25 bp)
AGATTGCATTTACTTTCTCCTTCTC
LOC_Os05g35980
Os.54692.1.S1_at--242--4312Chr02:16825697..16825721 (25 bp)
CCTTCTCCTTTCTGCTATCAAATAG
NONE
Os.54692.1.S1_at--186--5212Chr02:16825729..16825753 (25 bp)
GAATTGTTCCGTGAATGCTGATCAT
NONE
Os.54692.1.S1_at--61--6712Chr02:16825734..16825758 (25 bp)
GTTCCGTGAATGCTGATCATATTAT
NONE
Target Sequence 
GGAGGTGAGGTCTTCCCCATTTGCTGCCGCCTCCGCCGCACTCATCGCCTGTCTTCATCGTGCGCATCCCTGCCGTGCGC
CATGTTTAGTTGTCTTCACCCTCGACGCCCCGGAGCCGGACGCCCACTGCCCACCTCCACGCCACCGGACAACCTCCATC
CCTGCCGTCCTCCTCTCCATCGTGTGCAACTTCTTCGTTATCTACACGCCCGAGGAGAGATGACTCCTACCGCGGAGGTT
GATGCACACCCGCCTTCTTTCTGTTGTGCCAGTATTCTCATCGATGAATGATTTTACCACACAACAGCAAAGCTGTTGCC
ATCTGCCGGCATTATCTCAGGTTTGCTTTTCCGCATCCTTCTCTCCTTATCAATTTCTTTATGTGCCCCTTGTCAGATTG
CATTTACTTTCTCCTTCTCCTTTCTGCTATCAAATAGGATCAATGAATTGTTCCGTGAATGCTGATCATATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis