Browse Element(s) Details


Os.52875.1.S1_at

Description gb:AK069677.1
DB_XREF= gi:32979701
TID=Os.52875.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027I11, full insert sequence.
FL= gb:AK069677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3600011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0019171molecular_function3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52875.1.S1_at--721--9551Chr05:21240799..21240823 (25 bp)
TCTTCCCAGGGCATTTTCCGGAGAG
LOC_Os05g36000
Os.52875.1.S1_at--1098--10271Chr05:21240813..21240837 (25 bp)
TTTCCGGAGAGACCTATAATGCCTG
LOC_Os05g36000
Os.52875.1.S1_at--819--2851Chr05:21241556..21241580 (25 bp)
AAGTGAGATTTCGTAAGCCTGTGAT
LOC_Os05g36000
Os.52875.1.S1_at--931--1671Chr05:21241571..21241595 (25 bp)
AGCCTGTGATTGCTGGAGACACCTT
LOC_Os05g36000
Os.52875.1.S1_at--341--5511Chr05:21241655..21241679 (25 bp)
GAAAAGCATATGTTGGAGGCGACCT
LOC_Os05g36000
Os.52875.1.S1_at--866--6731Chr05:21241695..21241719 (25 bp)
GTTCTTGATGGCAACCGGATCTGAA
LOC_Os05g36000
Os.52875.1.S1_at--1151--7031Chr05:21241724..21241748 (25 bp)
GTACAAGGCAATGGTGCAGCTTCAT
LOC_Os05g36000
Os.52875.1.S1_at--442--2491Chr05:21241783..21241807 (25 bp)
AACAGTGTACTGTAGCTCCTATAGT
LOC_Os05g36000
Os.52875.1.S1_at--63--6971Chr05:21241794..21241818 (25 bp)
GTAGCTCCTATAGTCTAGTCTCGAT
LOC_Os05g36000
Os.52875.1.S1_at--836--1151Chr05:21241810..21241834 (25 bp)
AGTCTCGATGGTGATGCTTAATGCA
LOC_Os05g36000
Os.52875.1.S1_at--442--8531Chr05:21241902..21241926 (25 bp)
TGGACGACGTCTTTGCTTTTTGAAA
LOC_Os05g36000
Target Sequence 
TCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGCCCAGGTTGGAGGTCTG
GTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCC
TGTGATTGCTGGAGACACCTTGATTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAG
GAAAAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTGAATAAGGTACAAGGCAA
TGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATGTTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCT
CGATGGTGATGCTTAATGCAGGACTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGAT
ATGTATATGGACGACGTCTTTGCTTTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis