Browse Element(s) Details


OsAffx.27186.1.S1_at

Description tigr:9633.m03336
TID=OsAffx.27186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3580011/11expressed protein
LOC_Os05g359501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27186.1.S1_at--554--2811Chr05:21157679..21157824 (25 bp)
AAGATCACTATTTCGGACGTGCGGG
LOC_Os05g35800
OsAffx.27186.1.S1_at--336--9691Chr05:21157683..21157828 (25 bp)
TCACTATTTCGGACGTGCGGGTTTC
LOC_Os05g35800
OsAffx.27186.1.S1_at--644--5751Chr05:21157815..21157839 (25 bp)
GACGTGCGGGTTTCCGGCGACGAGT
LOC_Os05g35800
OsAffx.27186.1.S1_at--1063--4111Chr05:21157849..21157873 (25 bp)
CGCAGAACCCCTCGCTAAGGCTGGG
LOC_Os05g35800
OsAffx.27186.1.S1_at--1093--9151Chr05:21157878..21157902 (25 bp)
TGCGCCGCCGTATTGCTGCTTCTGG
LOC_Os05g35800
OsAffx.27186.1.S1_at--724--71Chr05:21157889..21157913 (25 bp)
ATTGCTGCTTCTGGCGCAGGTCACC
LOC_Os05g35800
OsAffx.27186.1.S1_at--943--10631Chr05:21158007..21158129 (25 bp)
TTCGCCGTTGCCTCATGGATAGCGG
LOC_Os05g35800
OsAffx.27186.1.S1_at--533--8851Chr05:21158133..21158157 (25 bp)
TGATCGCCGTAGTGCTGTTCGTGGA
LOC_Os05g35800
OsAffx.27186.1.S1_at--82--5452Chr05:21158170..21158194 (25 bp)
GAACGCCAACGTGGCGAGGGACACC
LOC_Os05g35800
OsAffx.27186.1.S1_at--554--9431Chr05:21158268..21158292 (25 bp)
TCGGTGTCGCCTCCTACGTCATGCT
LOC_Os05g35800
OsAffx.27186.1.S1_at--931--4131Chr05:21158358..21158382 (25 bp)
CGCTGCTGCACTCCGGGATCGCGAT
LOC_Os05g35800
Target Sequence 
AAGATCACTATTTCGGACGTGCGGGTTTCCGGCGACGAGTGCCTGTACCCGCAGAACCCCTCGCTAAGGCTGGGGCTCTG
CGCCGCCGTATTGCTGCTTCTGGCGCAGGTCACCGTGTCCGCCATCGGCGGCTGCGGCTGCTGCTGCGGCAACGGCAAGC
CCCGCGGCATCCCGTCCTCCAAGACCAACCGGGTCGTCGGCATCGTCTTCGCCGTTGCCTCATGGATAGCGGCGGTGATC
GCCGTAGTGCTGTTCGTGGAGGGGGCGGCGTGGAACGCCAACGTGGCGAGGGACACCGCGCCGGTGTGCTACTTCCTCAA
GGACGGCGTCTTCGCGGCCGCGGCCGTGCTGGCCCTCGCCGCCACGGCGCTCGGTGTCGCCTCCTACGTCATGCTCCGCA
GGCAGCTGCCCGACGACGACGACGACGCACCGGCGGGCGCGGTCGCGTCCTGGAGGCAGCCGCTGCTGCACTCCGGGATC
GCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis