Browse Element(s) Details


OsAffx.27188.2.S1_at

Description tigr:9633.m03339
TID=OsAffx.27188.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified
LOC_Os05g35870NANA5+21196280..21196808hypothetical protein
LOC_Os05g35880Os.47463.1.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35880Os.14491.2.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27188.2.S1_at--437--4511Chr05:21175704..21175724 (21 bp)
GCCGAGGGCTCTAAGCTCACTAGTT
LOC_Os05g35830
OsAffx.27188.2.S1_at--735--9791Chr05:21175715..21176116 (25 bp)
TAAGCTCACTAGTTGCCTATACTCG
LOC_Os05g35830
OsAffx.27188.2.S1_at--1057--10031Chr05:21176102..21176125 (24 bp)
TAGTTGCCTATACTCGTCGACGAAC
LOC_Os05g35830
OsAffx.27188.2.S1_at--680--10151Chr05:21176109..21176133 (25 bp)
TATACTCGTCGACGAACCCATCGGC
LOC_Os05g35830
OsAffx.27188.2.S1_at--495--7131Chr05:21176273..21176449 (25 bp)
GTCATCTCATGGATTGCGGCGGTGA
LOC_Os05g35830
OsAffx.27188.2.S1_at--547--8871Chr05:21176459..21176483 (25 bp)
TGATGTTCCTGGACGCCGGGATCGT
LOC_Os05g35830
OsAffx.27188.2.S1_at--279--7551Chr05:21176482..21176506 (25 bp)
GTGGCGTCGGAGTGCTTCATCGTCA
LOC_Os05g35830
OsAffx.27188.2.S1_at--69--10551Chr05:21176497..21176521 (25 bp)
TTCATCGTCAGGGAAGGCTTCTTCG
LOC_Os05g35830
OsAffx.27188.2.S1_at--937--9411Chr05:21176558..21176582 (25 bp)
TCGGGCTAACCTCCTACATCGTGCT
LOC_Os05g35830
OsAffx.27188.2.S1_at--30--511Chr05:21176629..21176653 (25 bp)
ATCGGGATCCCGATGGACGCTGTTC
LOC_Os05g35830
OsAffx.27188.2.S1_at--787--6151Chr05:21176640..21176664 (25 bp)
GATGGACGCTGTTCCCGGGTACCCG
LOC_Os05g35830
Target Sequence 
GCCGAGGGCTCTAAGCTCACTAGTTGCCTATACTCGTCGACGAACCCATCGGCGCTCGGGCTGGGCGTATGCGCGGCCAT
CTTCCTGGTGATGGCGCAGGTCACCGTGACGGCCGTCGGCGGCTGCTGCGGCTGCTGCAAGTCCCGCGCCATCCCGTCCG
AGACCAAGCGGATCGTCGGCGTCGTCTGCGCCGTCATCTCATGGATTGCGGCGGTGATCGCGTTCGTGATGTTCCTGGAC
GCCGGGATCGTGGCGTCGGAGTGCTTCATCGTCAGGGAAGGCTTCTTCGCCGGCGCCGGGGTGCTGGCCCTGATCGCCAC
GGCGCTCGGGCTAACCTCCTACATCGTGCTCCGCCCGCAGCCCGACGCGGCGGCGGGGAGAGGCGAGCCCACGCCGATCG
GGATCCCGATGGACGCTGTTCCCGGGTACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27188.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis