Browse Element(s) Details


OsAffx.27187.1.S1_at

Description tigr:9633.m03337
TID=OsAffx.27187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3581011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27187.1.S1_at--99--1231Chr05:21164650..21164844 (25 bp)
AGTTCACTGATTGTGCATCGTCGCT
LOC_Os05g35810
OsAffx.27187.1.S1_at--750--9431Chr05:21164844..21164868 (25 bp)
TCGGGTTGGCGATCGCAGCGACCAT
LOC_Os05g35810
OsAffx.27187.1.S1_at--150--9431Chr05:21164970..21164992 (23 bp)
TCGTGTGCGCCTCGATCTCATGGGT
LOC_Os05g35810
OsAffx.27187.1.S1_at--325--6391Chr05:21165492..21165516 (25 bp)
GATCGCGTTTGCGTTGTTCGTGGAC
LOC_Os05g35810
OsAffx.27187.1.S1_at--72--8811Chr05:21165506..21165530 (25 bp)
TGTTCGTGGACGGATCAATCGGCGC
LOC_Os05g35810
OsAffx.27187.1.S1_at--553--9431Chr05:21165602..21165626 (25 bp)
TCGGGATCACCTCGTTTATCATGCT
LOC_Os05g35810
OsAffx.27187.1.S1_at--300--10431Chr05:21165617..21165641 (25 bp)
TTATCATGCTCCGTATGCATCCGCA
LOC_Os05g35810
OsAffx.27187.1.S1_at--382--1831Chr05:21165700..21165724 (25 bp)
ACGCCGATCGGGACGCCGATAGACA
LOC_Os05g35810
OsAffx.27187.1.S1_at--964--6471Chr05:21165717..21165741 (25 bp)
GATAGACATCCACGGATTCCGGCCG
LOC_Os05g35810
OsAffx.27187.1.S1_at--1138--7771Chr05:21165762..21165786 (25 bp)
GGTGCCTGAGCCGTTGCCGAACTAT
LOC_Os05g35810
OsAffx.27187.1.S1_at--1130--5531Chr05:21165839..21165863 (25 bp)
GAAACGGCAACCAATTAGCACCCGA
LOC_Os05g35810
Target Sequence 
AGTTCACTGATTGTGCATCGTCGCTCGGGTTGGCGATCGCAGCGACCATCTTCCTGATGATGGCGCAGGTCACCGTTGCG
GCCGTCGGCGGCTGCTGCGGGTGCTGCAAGTCCCGTGCCGTCCCGTCCGAGACCAAGCGGATCGTCGGCGTCGTGTGCGC
CTCGATCTCATGGGTGGCGGCGGTGATCGCGTTTGCGTTGTTCGTGGACGGATCAATCGGCGCGGCGGTGGCGTGCGTCG
GCCTGGTCGGCGAGTTCGCGGGCGCGGGCGTGCTGGTCCTCGTCGCCACGGGCCTCGGGATCACCTCGTTTATCATGCTC
CGTATGCATCCGCAGGCCGGCGAGGCGGCGGCAGACCGGGCGGCCCCGCGGGATTACGACGACGACGAACCCACGCCGAT
CGGGACGCCGATAGACATCCACGGATTCCGGCCGCCGATGCCTCCTAACCCTCAGGTGCCTGAGCCGTTGCCGAACTATC
CACCGCCACCGTACTCCCCTGCTCCTGCTCCTGCTCCGGCTCCGGCTGAGGGAAACGGCAACCAATTAGCACCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis