Browse Element(s) Details


Os.16240.1.A1_s_at

Description gb:CA762732
DB_XREF= gi:25806771
DB_XREF=BR060003B10G08.ab1
CLONE=BR060003B10G08.ab1
TID=Os.16240.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16240 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171661.1 (A.thaliana) protein serinethreonine kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3605011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36060Os.41695.15.S1_s_at11/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.3.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.5.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.2.S1_x_at8/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.4.S1_x_at1/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36070Os.7138.1.A1_x_at10/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.50759.1.S1_at9/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.46111.1.S1_at4/115+21286980..21293326signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16240.1.A1_s_at--1013--9071Chr05:21260222..21260246 (25 bp)
TGCTCTGAGGTGTGTGGATCCCGAC
LOC_Os05g36050
Os.16240.1.A1_s_at--799--751Chr05:21260172..21260196 (25 bp)
ATGTCATCCATATGCTCGAAGTCGA
LOC_Os05g36050
Os.16240.1.A1_s_at--299--1151Chr05:21260153..21260177 (25 bp)
AGTCGATGACTTCCCATACCGAGAA
LOC_Os05g36050
Os.16240.1.A1_s_at--260--7571Chr05:21259399..21259423 (25 bp)
GGGCGAGCCCACTGGACAGAACAAG
LOC_Os05g36050
Os.16240.1.A1_s_at--18--1191Chr05:21259316..21259340 (25 bp)
AGTACGCCATCCAGATTGCACGAGA
LOC_Os05g36050
Os.16240.1.A1_s_at--47--6511Chr05:21259285..21259309 (25 bp)
GATAGGTCTCACTTGATCGATGGCC
LOC_Os05g36050
Os.16240.1.A1_s_at--395--6231Chr05:21259267..21259291 (25 bp)
GATGGCCTCATCAGGGCTCTAGCTA
LOC_Os05g36050
Os.16240.1.A1_s_at--228--10011Chr05:21259248..21259272 (25 bp)
TAGCTAGCGCTGTAACCTGTTTTTT
LOC_Os05g36050
Os.16240.1.A1_s_at--943--3771Chr05:21259205..21259229 (25 bp)
CTCTGGTTGTGCTATTCGTGTTGAT
LOC_Os05g36050
Os.16240.1.A1_s_at--194--3591Chr05:21259130..21259154 (25 bp)
CATTTGCCTTCCATTCATGCTGTTG
LOC_Os05g36050
Os.16240.1.A1_s_at--1011--4731Chr05:21259112..21259136 (25 bp)
GCTGTTGAACGCTCTATGTACTGTG
LOC_Os05g36050
Target Sequence 
TGCTCTGAGGTGTGTGGATCCCGACTCGNAGAAGCGGCCGAAGATGGGGCATGTCATCCATATGCTCGAAGTCGATGACT
TCCCATACCGAGAAGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGAAGCCGGTGACGGAG
TCGGGCGACGAGGGCAACACCACCACAGCTGCCAGTACGCCATCCAGATTGCACGAGAGCTTGAGATAGGTCTCACTTGA
TCGATGGCCTCATCAGGGCTCTAGCTAGCGCTGTAACCTGTTTTTTTTTGTCCGTGTCGTTTGCTCTGGTTGTGCTATTC
GTGTTGATCGGTTGGTGCGTAAATTTTGTGCGAGTGTGGTGGTAGCTGTGGTTGGTTGCATTTGCCTTCCATTCATGCTG
TTGAACGCTCTATGTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16240.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis