Browse Element(s) Details


Os.46111.1.S1_at

Description gb:AK120229.1
DB_XREF= gi:37989852
TID=Os.46111.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043A06, full insert sequence.
FL= gb:AK120229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g360704/11signal peptide peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36060Os.41695.15.S1_s_at11/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.3.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.5.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.2.S1_x_at8/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.4.S1_x_at1/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36070Os.7138.1.A1_x_at10/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.50759.1.S1_at9/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.46111.1.S1_at4/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36080Os.43567.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.53217.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.38172.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36090Os.23220.1.S1_at11/115+21305604..21309490DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46111.1.S1_at--1026--3511Chr05:21293187..21293211 (25 bp)
CATGATAGAATCTTTCTGGTTTTGA
LOC_Os05g36070
Os.46111.1.S1_at--484--5191Chr05:21293261..21293285 (25 bp)
GCAATACTATAACCGGTACCTCTTG
LOC_Os05g36070
Os.46111.1.S1_at--209--6831Chr05:21293285..21293309 (25 bp)
GTTTACACTTATTTATCCTGGTGGT
LOC_Os05g36070
Os.46111.1.S1_at--605--4271Chr05:21293301..21293325 (25 bp)
CCTGGTGGTTGGAAGGATCTTTCCT
LOC_Os05g36070
Os.46111.1.S1_at--277--7971Chr05:21293315..21293339 (25 bp)
GGATCTTTCCTGAATTTTGGTATGG
NONE
Os.46111.1.S1_at--266--10251Chr05:21293330..21293354 (25 bp)
TTTGGTATGGTGAATAGCGCTCTGT
NONE
Os.46111.1.S1_at--872--5231Chr05:21293341..21293365 (25 bp)
GAATAGCGCTCTGTGATATCTTTCT
NONE
Os.46111.1.S1_at--244--10551Chr05:21293362..21293386 (25 bp)
TTCTTGGCACACTGTCGTGTCTGAA
NONE
Os.46111.1.S1_at--82--8731Chr05:21293374..21293398 (25 bp)
TGTCGTGTCTGAAACGAGGGATCTC
NONE
Os.46111.1.S1_at--1057--6131Chr05:21293389..21293413 (25 bp)
GAGGGATCTCGCAGAAATTCATGTG
NONE
Os.46111.1.S1_at--1077--1411Chr05:21293401..21293425 (25 bp)
AGAAATTCATGTGTGCTGCACTCTT
NONE
Target Sequence 
CATGATAGAATCTTTCTGGTTTTGAGAATTGTTTGGTCTGGTGAGTAGATGAGGAATGCATCCTAAGTGGTTTAGCAATA
CTATAACCGGTACCTCTTGTTTACACTTATTTATCCTGGTGGTTGGAAGGATCTTTCCTGAATTTTGGTATGGTGAATAG
CGCTCTGTGATATCTTTCTTGGCACACTGTCGTGTCTGAAACGAGGGATCTCGCAGAAATTCATGTGTGCTGCACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis