Browse Element(s) Details


OsAffx.14981.1.S1_at

Description tigr:9633.m03361
TID=OsAffx.14981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable serinethreonine-specific protein kinase (EC 2.7.1.-) T10P11.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3605010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36060Os.41695.15.S1_s_at11/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.3.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.5.S1_x_at9/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.2.S1_x_at8/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36060Os.41695.4.S1_x_at1/115+21271414..21278161transposon protein, putative, Mutator sub-class
LOC_Os05g36070Os.7138.1.A1_x_at10/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.50759.1.S1_at9/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.46111.1.S1_at4/115+21286980..21293326signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14981.1.S1_at--522--1351Chr05:21260264..21260288 (25 bp)
AGAGAAGCCTACCTCCAAGGCACTG
LOC_Os05g36050
OsAffx.14981.1.S1_at--927--5951Chr05:21260263..21260287 (25 bp)
GAGAAGCCTACCTCCAAGGCACTGA
LOC_Os05g36050
OsAffx.14981.1.S1_at--131--1451Chr05:21260262..21260286 (25 bp)
AGAAGCCTACCTCCAAGGCACTGAA
LOC_Os05g36050
OsAffx.14981.1.S1_at--305--8671Chr05:21259091..21259115 (25 bp)
TGTGGATTGACATAGTTTGCTGCCG
LOC_Os05g36050
OsAffx.14981.1.S1_at--655--7511Chr05:21259090..21259114 (25 bp)
GTGGATTGACATAGTTTGCTGCCGG
LOC_Os05g36050
OsAffx.14981.1.S1_at--753--8571Chr05:21259089..21259113 (25 bp)
TGGATTGACATAGTTTGCTGCCGGC
LOC_Os05g36050
OsAffx.14981.1.S1_at--241--7931Chr05:21259088..21259112 (25 bp)
GGATTGACATAGTTTGCTGCCGGCC
LOC_Os05g36050
OsAffx.14981.1.S1_at--436--6591Chr05:21259087..21259111 (25 bp)
GATTGACATAGTTTGCTGCCGGCCG
LOC_Os05g36050
OsAffx.14981.1.S1_at--1004--51Chr05:21259086..21259110 (25 bp)
ATTGACATAGTTTGCTGCCGGCCGA
LOC_Os05g36050
OsAffx.14981.1.S1_at--562--10551Chr05:21259085..21259109 (25 bp)
TTGACATAGTTTGCTGCCGGCCGAC
LOC_Os05g36050
Target Sequence 
AGAGAAGCCTACCTCCAAGGCACTGAAGAAGGCTCTCTTGGTTGCTCTGAGGTGTGTGGATCCCGACTCGCAGAAGCGGC
CAAAGATGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAGATCGTCGGACTCCGCGGGCGAGC
CCACTGGACAGAACAAGAACATATGCGAAGCCGGTGACGGAGTCGGGCGACGAGGGCAACACCACCACAGCTGCCAGTAC
GCCATCCAGATTGCACGAGAGCTTGAGATAGGTCTCACTTGATCGATGGCCTCATCAGGGCTCTAGCTAGCGCTGTAACC
TGTTTTTTTTTTGTCCGTGTCGTTTGCTCTGGTTGTGCTATTCGTGTTGATCGGTTGGTGCGTAAATTTTGTGCGAGTGT
GGTGGTAGCTGTGGTTGGTTGCATTTGCCTTCCATTCATGCTGTTGAACGCTCTATGTACTGTGGATTGACATAGTTTGC
TGCCGGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis