Browse Element(s) Details


Os.7112.1.S1_at

Description gb:AK107949.1
DB_XREF= gi:32993158
TID=Os.7112.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B09, full insert sequence.
FL= gb:AK107949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0550011/11expressed protein
LOC_Os05g360501/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7112.1.S1_at--742--4951Chr03:2702625..2702649 (25 bp)
GCATGCTGACGGCTGGGAACCCTCT
LOC_Os03g05500
Os.7112.1.S1_at--978--10751Chr03:2702688..2702712 (25 bp)
TTGAGCACGAGTCGACGATGACCTC
LOC_Os03g05500
Os.7112.1.S1_at--300--691Chr03:2702705..2702729 (25 bp)
ATGACCTCGACGCAGAGCTCCGGCT
LOC_Os03g05500
Os.7112.1.S1_at--511--4011Chr03:2702760..2702784 (25 bp)
CGTCGCTGCAGGACATGTACTGCTT
LOC_Os03g05500
Os.7112.1.S1_at--886--951Chr03:2702769..2702793 (25 bp)
AGGACATGTACTGCTTCGGCGAGCA
LOC_Os03g05500
Os.7112.1.S1_at--147--951Chr03:2702796..2702820 (25 bp)
AGGAAGGCAGCTACTCAAGATGAAA
LOC_Os03g05500
Os.7112.1.S1_at--223--10332Chr03:2702842..2702866 (25 bp)
TTTCTTCTTAATTTGCAGCTTTCGT
LOC_Os03g05500
Os.7112.1.S1_at--808--10271Chr03:2702853..2702877 (25 bp)
TTTGCAGCTTTCGTTTGCTTCACAA
LOC_Os03g05500
Os.7112.1.S1_at--403--6751Chr03:2702887..2702911 (25 bp)
GTTCAGATTGTACCATGACTTCCCT
LOC_Os03g05500
Os.7112.1.S1_at--763--8871Chr03:2702902..2702926 (25 bp)
TGACTTCCCTTCTTGAGCTTAATTT
LOC_Os03g05500
Os.7112.1.S1_at--127--3131Chr03:2702922..2702946 (25 bp)
AATTTCGCTGGAAAAGCACTGTGTC
LOC_Os03g05500
Target Sequence 
GCATGCTGACGGCTGGGAACCCTCTCCTCCAGCATCAGCAGCAGCAGCAGCAGGCGTGGCAGATTGAGCACGAGTCGACG
ATGACCTCGACGCAGAGCTCCGGCTGCTACAGCGCGCCGCGCTCCGACGGGTCGACGTCGCTGCAGGACATGTACTGCTT
CGGCGAGCAGGAGGAAGGCAGCTACTCAAGATGAAAACGAAACCAAAAAAACAAAAGTTTCTTCTTAATTTGCAGCTTTC
GTTTGCTTCACAANTATCANAAGTTCAGATTGTACCATGACTTCCCTTCTTGAGCTTAATTTCGCTGGAAAAGCACTGTG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis