Browse Element(s) Details


Os.18786.1.S1_at

Description gb:AK065978.1
DB_XREF= gi:32975996
TID=Os.18786.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049K21, full insert sequence.
FL= gb:AK105035.1 gb:AK065978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0547011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18786.1.S1_at--974--10151Chr03:2689247..2689271 (25 bp)
TATCGTCGAGCGTGTTACTGCAAAA
LOC_Os03g05470
Os.18786.1.S1_at--684--1491Chr03:2689417..2689441 (25 bp)
AGCAACTGATGCGATCAACCTGGCC
LOC_Os03g05470
Os.18786.1.S1_at--495--8491Chr03:2689461..2689485 (25 bp)
TGGCTCTGCAGTGCTTAGCTACAAC
LOC_Os03g05470
Os.18786.1.S1_at--119--911Chr03:2689508..2689532 (25 bp)
AGGCGATGCGCTGAGATCCTATGGA
LOC_Os03g05470
Os.18786.1.S1_at--371--1791Chr03:2689568..2689592 (25 bp)
ACCGCATCCCTGAACTGAACTGAGA
LOC_Os03g05470
Os.18786.1.S1_at--1162--2551Chr03:2689585..2689609 (25 bp)
AACTGAGACAGTTCACTTGGAGCAA
LOC_Os03g05470
Os.18786.1.S1_at--262--1431Chr03:2689613..2689637 (25 bp)
AGAAAAGCTGCACTCCAGTTTGCCT
LOC_Os03g05470
Os.18786.1.S1_at--410--9191Chr03:2689633..2689657 (25 bp)
TGCCTCTCTTCAAAGCGTGGTGGTA
LOC_Os03g05470
Os.18786.1.S1_at--49--671Chr03:2689657..2689681 (25 bp)
ATGAATCACCCGATTGCTGGATGAT
LOC_Os03g05470
Os.18786.1.S1_at--1030--2571Chr03:2689725..2689749 (25 bp)
AACGGGACTGGTGATCTTCCTAGGA
LOC_Os03g05470
Os.18786.1.S1_at--725--7471Chr03:2689753..2689777 (25 bp)
GTGTGTTCACCAGCTAGCAACTAGG
LOC_Os03g05470
Target Sequence 
TATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATC
TAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGG
AACAGNCCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGC
ATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGG
TGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGAC
TGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis