Browse Element(s) Details


OsAffx.24979.1.S1_at

Description tigr:9631.m00466
TID=OsAffx.24979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0543011/11signal peptidase I family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24979.1.S1_at--965--3691Chr03:2662086..2662110 (25 bp)
CTAGGTGCTGTAGTGCTAGCCGAAA
LOC_Os03g05430
OsAffx.24979.1.S1_at--338--2331Chr03:2662124..2662148 (25 bp)
AAAGTACCAGTTCTCCCATGGTGAT
LOC_Os03g05430
OsAffx.24979.1.S1_at--1065--6271Chr03:2662146..2662261 (25 bp)
GATGTTGTTTTGTTCAAGTGCCCCA
LOC_Os03g05430
OsAffx.24979.1.S1_at--1122--6751Chr03:2661995..2662272 (25 bp)
GTTCAAGTGCCCCAGTGATCATAGG
LOC_Os03g05430
OsAffx.24979.1.S1_at--1044--3211Chr03:2662284..2662308 (25 bp)
CAAGAGATTAATTGCCCTGCCTGGG
LOC_Os03g05430
OsAffx.24979.1.S1_at--808--4191Chr03:2662323..2662347 (25 bp)
CCCTGGCACCCCTGATATAATTAAG
LOC_Os03g05430
OsAffx.24979.1.S1_at--1149--5311Chr03:2662372..2662396 (25 bp)
GAAGGTGATAATGCTGCCTGCAGCT
LOC_Os03g05430
OsAffx.24979.1.S1_at--619--4471Chr03:2662387..2662411 (25 bp)
GCCTGCAGCTGGGATTCTAGGTCAT
LOC_Os03g05430
OsAffx.24979.1.S1_at--312--111Chr03:2662400..2662420 (21 bp)
ATTCTAGGTCATTTGGCCCAGAGGT
LOC_Os03g05430
OsAffx.24979.1.S1_at--599--9831Chr03:2664272..2664296 (25 bp)
TAAAGGGAGGGTGGCCCACGTCATC
LOC_Os03g05430
OsAffx.24979.1.S1_at--261--7131Chr03:2664291..2664315 (25 bp)
GTCATCTGGCCACCGTCAAAGATTG
LOC_Os03g05430
Target Sequence 
CTAGGTGCTGTAGTGCTAGCCGAAAGGAGCTGCCTCCAAAAGTACCAGTTCTCCCATGGTGATGTTGTTTTGTTCAAGTG
CCCCAGTGATCATAGGGAGTTGTTTGTCAAGAGATTAATTGCCCTGCCTGGGGAGTGGATGCAGCTCCCTGGCACCCCTG
ATATAATTAAGATCCCAGAAGGGCACTGCTGGGTTGAAGGTGATAATGCTGCCTGCAGCTGGGATTCTAGGTCATTTGGC
CCAGAGGTTGATGGTATTAAGGATAGTATGGGTGGGGTACGGGTTTCGAGTGCTAGTGGGATGATAGGGCCCCCTAGGAT
CCCTTTAGGTCTAATTAAAGGGAGGGTGGCCCACGTCATCTGGCCACCGTCAAAGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis