Browse Element(s) Details


OsAffx.20100.3.S1_at

Description tigr:9631.m00463
TID=OsAffx.20100.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05380OsAffx.29410.2.S1_at11/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.13325.1.S1_at2/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.29576.5.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_x_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20100.3.S1_at--1162--10352Chr11:8866119..8866138 (20 bp)
TTTTCAAGGTCACTCCTAAGTGTAG
NONE
OsAffx.20100.3.S1_at--1059--10112Chr11:8865868..8866137 (25 bp)
TTTCAAGGTCACTCCTAAGTGTAGT
NONE
OsAffx.20100.3.S1_at--387--10512Chr11:8865867..8866136 (25 bp)
TTCAAGGTCACTCCTAAGTGTAGTG
NONE
OsAffx.20100.3.S1_at--806--9712Chr11:8865866..8866135 (25 bp)
TCAAGGTCACTCCTAAGTGTAGTGG
NONE
OsAffx.20100.3.S1_at--818--3212Chr11:8865865..8866134 (25 bp)
CAAGGTCACTCCTAAGTGTAGTGGC
NONE
OsAffx.20100.3.S1_at--1015--2892Chr11:8865864..8866133 (25 bp)
AAGGTCACTCCTAAGTGTAGTGGCA
NONE
OsAffx.20100.3.S1_at--311--1032Chr11:8865863..8866132 (25 bp)
AGGTCACTCCTAAGTGTAGTGGCAA
NONE
OsAffx.20100.3.S1_at--264--7831Chr03:2646645..2646669 (25 bp)
GGTCACTCCTAAGTGTAGTGGCAAA
LOC_Os03g05410
OsAffx.20100.3.S1_at--307--7092Chr11:8865861..8866130 (25 bp)
GTCACTCCTAAGTGTAGTGGCAAAA
NONE
OsAffx.20100.3.S1_at--311--9672Chr11:8865860..8866129 (25 bp)
TCACTCCTAAGTGTAGTGGCAAAAA
NONE
OsAffx.20100.3.S1_at--549--3332Chr11:8865859..8865879 (21 bp)
CACTCCTAAGTGTAGTGGCAAAAAT
NONE
Target Sequence 
TTTTCAAGGTCACTCCTAAGTGTAGTGGCAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20100.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis