Browse Element(s) Details


OsAffx.29410.2.S1_at

Description tigr:9631.m00458
TID=OsAffx.29410.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0538011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05340NANA3+2589151..2598108retrotransposon protein, putative, unclassified, expressed
LOC_Os03g05350NANA3+2598775..2603160retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.18.S1_x_at11/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.3.S1_x_at9/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.54071.1.S1_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_x_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_at3/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.17756.1.S1_x_at1/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05370OsAffx.24978.1.S1_at11/113+2618382..2619587hypothetical protein
LOC_Os03g05380OsAffx.29410.2.S1_at11/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.13325.1.S1_at2/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.29576.5.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_x_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29410.2.S1_at--546--8371Chr03:2622026..2622050 (25 bp)
GGCGAGCCACACTTGGAGCCAAGTC
LOC_Os03g05380
OsAffx.29410.2.S1_at--177--2851Chr03:2622046..2622070 (25 bp)
AAGTCGGCGACTGGACATTGCCCTT
LOC_Os03g05380
OsAffx.29410.2.S1_at--290--9471Chr03:2622106..2622130 (25 bp)
TCTGGTTTGGTTTCTCTGCTGGTGC
LOC_Os03g05380
OsAffx.29410.2.S1_at--907--3491Chr03:2622161..2622185 (25 bp)
CATGGATTGTCAGTCCCAGCCACAG
LOC_Os03g05380
OsAffx.29410.2.S1_at--997--3371Chr03:2622177..2622201 (25 bp)
CAGCCACAGCTAGTTGGTCCTTGGA
LOC_Os03g05380
OsAffx.29410.2.S1_at--802--10871Chr03:2622197..2622221 (25 bp)
TTGGAAGGAGCTTGAACCACCCATG
LOC_Os03g05380
OsAffx.29410.2.S1_at--11--5431Chr03:2622210..2622234 (25 bp)
GAACCACCCATGGAATGGCGGGAAA
LOC_Os03g05380
OsAffx.29410.2.S1_at--1065--8351Chr03:2622226..2622250 (25 bp)
GGCGGGAAACGTATGATTCTCAACT
LOC_Os03g05380
OsAffx.29410.2.S1_at--847--5171Chr03:2622282..2622306 (25 bp)
GCAAGGTTCTTCCAAACTAAGCGAG
LOC_Os03g05380
OsAffx.29410.2.S1_at--252--431Chr03:2622334..2622358 (25 bp)
ATCTTTGGCAGGATGTTACGGCCTT
LOC_Os03g05380
OsAffx.29410.2.S1_at--432--691Chr03:2622346..2622370 (25 bp)
ATGTTACGGCCTTGACCGGTGTGGA
LOC_Os03g05380
Target Sequence 
GGCGAGCCACACTTGGAGCCAAGTCGGCGACTGGACATTGCCCTTCGACGCCAAGCTCGAGTATGTACCTGAGCTCAAGC
TCTGGTTTGGTTTCTCTGCTGGTGCCCAGCACTTTGCTGCTTCTGACCTCTCCTCCATGGATTGTCAGTCCCAGCCACAG
CTAGTTGGTCCTTGGAAGGAGCTTGAACCACCCATGGAATGGCGGGAAACGTATGATTCTCAACTTGTCAATCTGGGCTC
TGGCAGGTTTTGCATCGCAAGGTTCTTCCAAACTAAGCGAGAGGGCTGTTATGACGAAGACGATGTATATCTTTGGCAGG
ATGTTACGGCCTTGACCGGTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29410.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis