Browse Element(s) Details


Os.4707.1.S1_at

Description gb:AK062160.1
DB_XREF= gi:32972178
TID=Os.4707.1
CNT=87
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A12, full insert sequence.
FL= gb:AK071480.1 gb:AK062160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0539011/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05360Os.35344.18.S1_x_at11/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.3.S1_x_at9/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.54071.1.S1_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_x_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_at3/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.17756.1.S1_x_at1/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05370OsAffx.24978.1.S1_at11/113+2618382..2619587hypothetical protein
LOC_Os03g05380OsAffx.29410.2.S1_at11/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.13325.1.S1_at2/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.29576.5.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_x_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4707.1.S1_at--780--1091Chr03:2631741..2631765 (25 bp)
AGTGGCTGCATCAGCTGCTGCAATC
LOC_Os03g05390
Os.4707.1.S1_at--785--5291Chr03:2631699..2631723 (25 bp)
GAAGGCCTGGCTTATCCTAGCGTGG
LOC_Os03g05390
Os.4707.1.S1_at--830--551Chr03:2631686..2631710 (25 bp)
ATCCTAGCGTGGGTCAGCACCGTTG
LOC_Os03g05390
Os.4707.1.S1_at--50--10451Chr03:2631664..2631688 (25 bp)
TTGCCGGGAACCTCACACTACTGGG
LOC_Os03g05390
Os.4707.1.S1_at--608--1531Chr03:2631613..2631637 (25 bp)
AGCAGGCTAGAAGAGCTCAGTTCTT
LOC_Os03g05390
Os.4707.1.S1_at--292--9091Chr03:2631514..2631538 (25 bp)
TGCTCATCGTCACCAGTTACTGAAG
LOC_Os03g05390
Os.4707.1.S1_at--474--1271Chr03:2631436..2631460 (25 bp)
AGATAGATGAACGAACCCTTTGGAT
LOC_Os03g05390
Os.4707.1.S1_at--373--8291Chr03:2631376..2631400 (25 bp)
GGCTTGTCCTGTAAAACTCGTGTGT
LOC_Os03g05390
Os.4707.1.S1_at--218--10251Chr03:2631349..2631373 (25 bp)
TTTGTGTGTATCTATGCCAGCTGCT
LOC_Os03g05390
Os.4707.1.S1_at--1018--4811Chr03:2631310..2631334 (25 bp)
GCTCTTTTGTTGTCGCTAAGCAGAC
LOC_Os03g05390
Os.4707.1.S1_at--843--8311Chr03:2631257..2631281 (25 bp)
GGCTAAGCAACCTGCATTTTCAGTG
LOC_Os03g05390
Target Sequence 
AGTGGCTGCATCAGCTGCTGCAATCTCTCACGATTCAGAGAGGAAGGCCTGGCTTATCCTAGCGTGGGTCAGCACCGTTG
CCGGGAACCTCACACTACTGGGCTCNGCTGCGAACCTCATCGTCTGCGAGCAGGCTAGAAGAGCTCAGTTCTTCGGCTAN
AACCTCTCCTTCTGGAGCCACCTCCGGTTCGGGGTGCCGTCGACCATCGTCGTCACGGCGATCGGGCTGCTCATCGTCAC
CAGTTACTGAAGAAGAAGAAGAAGAAGAAGAAGCTGACAGCAGCATAAGGTAGCGTACAAGAAGGAGATAGATGAACGAA
CCCTTTGGATCAATAAGAGAGAGTACATGTAAAATTTCTAAAATAGGCTTGTCCTGTAAAACTCGTGTGTGTTTTGTGTG
TATCTATGCCAGCTGCTGCGTCTGTGCCCTTGCTCTTTTGTTGTCGCTAAGCAGACGGTGATTGAGAAGGATGCAGATGT
AGCAGGCTAAGCAACCTGCATTTTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis