Browse Element(s) Details


Os.56829.1.S1_at

Description gb:AK110468.1
DB_XREF= gi:32995677
TID=Os.56829.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G10, full insert sequence.
FL= gb:AK110468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0544011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56829.1.S1_at--765--4031Chr03:2665266..2665290 (25 bp)
CGTTCCCGATGATGTCGCCGGCGTG
LOC_Os03g05440
Os.56829.1.S1_at--253--4691Chr03:2665180..2665204 (25 bp)
GCGGCGAAGGGCACGTACATACTCA
LOC_Os03g05440
Os.56829.1.S1_at--191--4031Chr03:2665167..2665191 (25 bp)
CGTACATACTCAACCGGGACATGGA
LOC_Os03g05440
Os.56829.1.S1_at--1154--2111Chr03:2665149..2665173 (25 bp)
ACATGGAGACGATCAGCCGGCTGGT
LOC_Os03g05440
Os.56829.1.S1_at--216--2751Chr03:2665000..2665024 (25 bp)
AAGAACGAGGAGAGCTTCAGGCAGC
LOC_Os03g05440
Os.56829.1.S1_at--175--3771Chr03:2664946..2664970 (25 bp)
CTCTGCTTCATGACCACCAACAAAG
LOC_Os03g05440
Os.56829.1.S1_at--951--5831Chr03:2664935..2664959 (25 bp)
GACCACCAACAAAGCCAGGATCATG
LOC_Os03g05440
Os.56829.1.S1_at--497--7831Chr03:2664882..2664906 (25 bp)
GGTAGAGCTCTGGATGCATCAACAT
LOC_Os03g05440
Os.56829.1.S1_at--1037--5571Chr03:2664843..2664867 (25 bp)
GAAATTCGTACCTCTGTAGGACACA
LOC_Os03g05440
Os.56829.1.S1_at--451--6911Chr03:2664828..2664852 (25 bp)
GTAGGACACATTTTAGTCTTTGTAC
LOC_Os03g05440
Os.56829.1.S1_at--450--7031Chr03:2664695..2664719 (25 bp)
GTAAACATGTTACAGCATTGAGGAA
LOC_Os03g05440
Target Sequence 
CGTTCCCGATGATGTCGCCGGCGTGGCTAGGGGAGCGGTTCTTCTCCGGGCGGGCGGCGCGGCGGGCGCTGGTGCAGCTG
GAGGCCGCGGCGAAGGGCACGTACATACTCAACCGGGACATGGAGACGATCAGCCGGCTGGTGGCGCGGGTGCGCGACGA
GGGGGAACACATGGTGGCGCTGCGGCGGCTGTGCGTGGAGCACCGGCCGGCGGCGGGCGCCGGCGGGAAGGGGAGGCTGG
TGCAGGAGGTGCTGAGGCAGCTGAGCAAGAACGAGGAGAGCTTCAGGCAGCAGCTGGACGAGCTCGAGGAGCACCTCTTC
CTCTGCTTCATGACCACCAACAAAGCCAGGATCATGGTGATGAACTTCATGGCTGCTGCTGCAAGGTAGAGCTCTGGATG
CATCAACATGATGAAGGAAAAAGGAAATTCGTACCTCTGTAGGACACATTTTAGTCTTTGTACATAACAACAGTAGATTT
ATTTTTCTTAGTACAGAAAAAAGGGAAAAATATTTCATTTGGCATTAAAGGTTTTTGCTTTATTTTTTTTGTACATATAT
ACACACAGCATGTAAACATGTTACAGCATTGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis